PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0042s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 213aa    MW: 23983.8 Da    PI: 6.7906
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0042s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.61.3e-5631126297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl+kyr
  Kalax.0042s0024.1.p  31 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVAPLKVYLNKYR 120
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+eg+k
  Kalax.0042s0024.1.p 121 EIEGDK 126
                          ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-5427149IPR009072Histone-fold
SuperFamilySSF471135.99E-4133148IPR009072Histone-fold
PfamPF008081.1E-2736100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.4E-196482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.4E-1983101No hitNo description
PRINTSPR006154.4E-19102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENESRGCWP SGGSQDVFSP AKKGTNNLSN KEQDRFLPIA NVGRIMKKVI PGNGKISKDA  60
KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDVIWAI TTLGFEDYVA PLKVYLNKYR  120
EIEGDKLNIP NKQRSDQEQQ QQLNEQNATT TSLPYDHTHL HPPPHHSVYS SSNFITPQTF  180
LTPDQPFPLP FSPTSVQKQI PQEQRIDSVG HW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-4526121297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652701.17e-91nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT92e-70NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A2H5QG311e-86A0A2H5QG31_CITUN; Uncharacterized protein
STRINGcassava4.1_024313m4e-85(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-69nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]