PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0042s0056.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 25869.6 Da PI: 4.4153

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0042s0056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.7e-20	34	87	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++ql++Le+ Fe ++++ e++ +LA +lgL+ rqV vWFqNrRa++k Kalax.0042s0056.1.p 34 KKRRLRPHQLKALERSFEVENKLESERKVQLAFELGLDPRQVAVWFQNRRARWK 87 556899***********************************************9 PP
2	HD-ZIP_I/II	118.6	3.3e-38	34	123	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl +q+k+LE+sFe e+kLe+erKv+la eLgl+prqvavWFqnrRAR+ktkqlE+d++ L++ayd l+++ +++++++e+L ++ Kalax.0042s0056.1.p 34 KKRRLRPHQLKALERSFEVENKLESERKVQLAFELGLDPRQVAVWFQNRRARWKTKQLERDFNLLQSAYDDLRQNYDAVKRDNETLILQI 123 9***********************************************************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-19	20	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-20	27	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	29	89	IPR001356	Homeobox domain
SMART	SM00389	5.7E-17	32	93	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-17	34	87	IPR001356	Homeobox domain
CDD	cd00086	4.55E-16	34	90	No hit	No description
PRINTS	PR00031	1.9E-5	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.9E-5	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-12	89	130	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MMKSSGSKRE FDSDVAFEVE EDEEFMEGSA QPDKKRRLRP HQLKALERSF EVENKLESER 60 KVQLAFELGL DPRQVAVWFQ NRRARWKTKQ LERDFNLLQS AYDDLRQNYD AVKRDNETLI 120 LQIGEMKQKL MVESGSSEKI GEGHFGPSFN YETAFHNNVN VVSSDSATSG TQSEENNSFN 180 GVVSSCGIPW TVEDAPSPAM WPADTYSFLA DEEPDLMFDW YCQNP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6K498	4e-40	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	4e-40	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	A0A443PGU0	5e-41	A0A443PGU0_9MAGN; Homeobox-leucine zipper protein ATHB-6-like protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	6e-42	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Kalax.0042s0056.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]