PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0042s0109.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 415aa    MW: 45125.8 Da    PI: 4.7939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0042s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1298141855
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er RR+++++ f++L +l+P++    + K++K+ i+e++v+YI+ L+
  Kalax.0042s0109.1.p  98 TERERRKKMRNMFDTLHSLVPNL----QSKPDKVKIVEETVNYIRTLE 141
                          6*********************9....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.6390140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1593151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-1196146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1497153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1098141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-1399145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEEDGKLQEE INNMFMWDCG SLSLWGCGDG NEKEMIEVAA ELEEGVNNGE ENKNREQDVE  60
LGKIVMAGGG EGDGEGGGGN DGKREDKAED PFDFRIQTER ERRKKMRNMF DTLHSLVPNL  120
QSKPDKVKIV EETVNYIRTL EQTLQTLQTK KQEKLKDTRG SISFNPYSPS SSSMMPPQPH  180
PQPQMVVEPY EAISREALLA EYYLNSSSSS RSITPPNSNA PTPKGHNTTA SNSALESPPI  240
VMIDTPPSAS SLKPNPNLSG NICGSPPIVM IDTPPNACSL KPNTNLSGNI WASPPIVMKP  300
NPGPGAGETP AKVTLSPSSV AFQTFTSKNV VLCVCGPEAN FNICGARKPG FYTGICSVLE  360
KYRLEVKSLQ VSSEEHSNLT KVMFQARTTA LLDQYPIEDI YRAAAVEMAH LVSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-11bHLH family protein