PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0043s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 274aa    MW: 30580.6 Da    PI: 7.8723
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0043s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.31.1e-092290270
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                         Wt    l+L++    +e +  ++ +  ++W+ +s+++++ g++r+ +qC+ +w++l  +y  ik ++++
  Kalax.0043s0017.1.p 22 WTLTDSLTLVNEIAAVEADCLDALSYYQKWKIISDNCAALGVNRTLNQCRRRWDSLFADYNSIKLWDED 90
                         888888888888888999999999999************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8292278IPR017877Myb-like domain
PfamPF138374.6E-83592No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPPKKTEESA SRRTRSQVAA DWTLTDSLTL VNEIAAVEAD CLDALSYYQK WKIISDNCAA  60
LGVNRTLNQC RRRWDSLFAD YNSIKLWDED GGGYWGLGRE RRRGIGLPEE FDRDLFNAVD  120
VVVKGQVERA SSRHDAVLED ADADPLGVIS PHVFKKQNHQ LTPQKRQIEV KKEKKIVDDK  180
KSGPMEVMAT QKGEKATSSS VEVMATQLRE KAEMIQAIHE GKLAENKDYT LSDLKQGAAS  240
RVNLARRQGD KLIDCFGAIG STLDQLCKVT LTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.13e-49sequence-specific DNA binding transcription factors