PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0043s0084.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 663aa MW: 72611 Da PI: 8.8408

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0043s0084.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.4e-09	372	409	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Kalax.0043s0084.2.p 372 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 409 554459******************************88 PP
2	BELL	113	1.6e-36	237	308	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk kL+ +l+eV++rY+qy++q+q+v++sF+++ag gsa+ Yt+lAl++iSr+FrcLkdai+ qi Kalax.0043s0084.2.p 237 ERQEIQMKKGKLVCMLDEVEQRYRQYHQQMQIVMASFQQAAGQGSARTYTALALRTISRQFRCLKDAIVTQI 308 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.3E-56	160	306	IPR006563	POX domain
Pfam	PF07526	1.2E-46	165	305	IPR006563	POX domain
PROSITE profile	PS50071	12.195	350	413	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.4E-29	352	426	IPR009057	Homeodomain-like
SMART	SM00389	5.3E-9	353	417	IPR001356	Homeobox domain
CDD	cd00086	8.62E-12	353	414	No hit	No description
SuperFamily	SSF46689	5.99E-17	354	420	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	370	409	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MAAYFNGGNS EIQAADGLQT LILMNPSYVN NQQHHQNPNN FIFVNPSMSP ATDQSQQLVG 60 IPLQQNHHQE AISALHGLIP RPHYNLWTPV DPSTATRETP RAQQGLSLSL SNSQQQQQQQ 120 RVDFVGPPSL AISPSGSKDD GMVFGGTPSP ASMISNGPVS GMRSVLLSSK YLKATQQLLE 180 EIVNVGSATD SAKKKDTATS SSSKQAAIEA SSPEVAAAAA GDGENGGKKA AELSTAERQE 240 IQMKKGKLVC MLDEVEQRYR QYHQQMQIVM ASFQQAAGQG SARTYTALAL RTISRQFRCL 300 KDAIVTQIRA VNKSLGEEDT GGKEGGSRLK FVDHHLRQQR ALQQLGMVQH NAWRPQRGLP 360 ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYS 420 EEVKEQENDG SPNKTGNTGA EASASKAPTD ENQLIAFKNA SQGNNGGAYQ NAAAKSDSGS 480 PGRLRNKNTR FSLIGSSELE GITEMSPKQQ RINGQMRHPT GSFESSMEMK SSDARNEHVL 540 MKFGLERQTG DDYSLITAGQ GNFVGGFGSY PVEDMGRFDT SQQYQPRFSG NGRVSLTLGL 600 TDSPQPFIPN QNMRRMDIGD TTEFGTISTT PDRTHTTSTA YESINIQNPK RFAVQLLPDF 660 VA*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MAAYFNGGNS EIQAADGLQT LILMNPSYVN NQQHHQNPNN FIFVNPSMSP ATDQSQQLVG  60
IPLQQNHHQE AISALHGLIP RPHYNLWTPV DPSTATRETP RAQQGLSLSL SNSQQQQQQQ  120
RVDFVGPPSL AISPSGSKDD GMVFGGTPSP ASMISNGPVS GMRSVLLSSK YLKATQQLLE  180
EIVNVGSATD SAKKKDTATS SSSKQAAIEA SSPEVAAAAA GDGENGGKKA AELSTAERQE  240
IQMKKGKLVC MLDEVEQRYR QYHQQMQIVM ASFQQAAGQG SARTYTALAL RTISRQFRCL  300
KDAIVTQIRA VNKSLGEEDT GGKEGGSRLK FVDHHLRQQR ALQQLGMVQH NAWRPQRGLP  360
ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYS  420
EEVKEQENDG SPNKTGNTGA EASASKAPTD ENQLIAFKNA SQGNNGGAYQ NAAAKSDSGS  480
PGRLRNKNTR FSLIGSSELE GITEMSPKQQ RINGQMRHPT GSFESSMEMK SSDARNEHVL  540
MKFGLERQTG DDYSLITAGQ GNFVGGFGSY PVEDMGRFDT SQQYQPRFSG NGRVSLTLGL  600
TDSPQPFIPN QNMRRMDIGD TTEFGTISTT PDRTHTTSTA YESINIQNPK RFAVQLLPDF  660
VA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	359	417	5	63	Homeobox protein Meis2
3k2a_B	5e-16	359	417	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809867.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809868.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809869.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809870.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018809871.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-156	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	B2MV69	0.0	B2MV69_9MAGN; BEL1
STRING	XP_007162972.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-125	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	Kalax.0043s0084.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]