PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0044s0067.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 224aa    MW: 26071.5 Da    PI: 6.3047
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0044s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-1965117456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++++t+eq+  Le  Fe++r++ ++++++LA++lgL+ rqV vWFqNrRa+ k
  Kalax.0044s0067.1.p  65 KRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLK 117
                          4589***********************************************87 PP
2HD-ZIP_I/II100.51.5e-3264155293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +kr+l++eq +lLE sFe+++kLe++rK++la eLgl+prqv vWFqnrRAR k ++lE ++++L++++d + +++++Le++   L ++l
  Kalax.0044s0067.1.p  64 RKRKLTEEQTALLELSFENDRKLETDRKKRLAAELGLEPRQVMVWFQNRRARLKCQKLEDEFAKLRSSHDDVLAQKTQLETQIFVLDQKL 153
                          8**********************************************************************************9999999 PP

          HD-ZIP_I/II  92 ke 93 
                          k+
  Kalax.0044s0067.1.p 154 KN 155
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.26159119IPR001356Homeobox domain
SMARTSM003894.6E-1562123IPR001356Homeobox domain
SuperFamilySSF466891.45E-1664125IPR009057Homeodomain-like
CDDcd000862.66E-1564117No hitNo description
PfamPF000462.5E-1665117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-1866124IPR009057Homeodomain-like
PRINTSPR000318.0E-69099IPR000047Helix-turn-helix motif
PRINTSPR000318.0E-699115IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAYCQRSLYG LETYDEGDYS MLLTSQELPC HTAEVEFTIP SGEKRQIRRR RKKNKGDENG  60
SVLRKRKLTE EQTALLELSF ENDRKLETDR KKRLAAELGL EPRQVMVWFQ NRRARLKCQK  120
LEDEFAKLRS SHDDVLAQKT QLETQIFVLD QKLKNVEKEL ERLSIWEEVS PAVHSTPTTS  180
SLSAKNQPID GSMFSQESSM QQYLENGFCF QLEDYSNMLT WFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14866RRRKKNKGDENGSVLRKRK
25066RKKNKGDENGSVLRKRK
36267LRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1P8B6F46e-39A0A1P8B6F4_ARATH; Homeobox protein 40
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.12e-37homeobox 53