PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0044s0090.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TALE

Protein Properties

Length: 686aa MW: 75574.6 Da PI: 6.8785

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0044s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	484	521	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Kalax.0044s0090.1.p 484 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 521 664559******************************88 PP
2	BELL	122.8	1.4e-39	344	415	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er e+q+kk+kLl +l+eVd+rY++y+eq+q+v++sF+ v+g gsa pYt+lA+ka+SrhFrcLkdaia q+ Kalax.0044s0090.1.p 344 ERVEHQRKKVKLLAMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGSAVPYTALAQKAMSRHFRCLKDAIAAQL 415 688******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.5E-72	260	413	IPR006563	POX domain
Pfam	PF07526	4.3E-52	265	412	IPR006563	POX domain
PROSITE profile	PS50071	12.503	462	525	IPR001356	Homeobox domain
CDD	cd00086	1.64E-12	465	526	No hit	No description
SMART	SM00389	1.2E-9	465	529	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-17	466	532	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-29	468	531	IPR009057	Homeodomain-like
Pfam	PF05920	3.4E-18	482	521	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGGGFPAP DENSGTGIPT VYETAGMLSE 60 MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH 120 HHQQQHHQRQ HHQQHQMTAI SVADSAAAAM QLFIMNPQSR SSTSPGQASA PPHSNTLHML 180 LPNNPNSGEF DTWGGGGEAQ GLSLSLASSL EAAKAEQFFF TQNHHHQQLQ QQQQTLHFNH 240 QMNNGLFVGP STSSPSSSSL TAMNMLRNSK YAKPTQELLE EFCSVGRGHF KKTKFRNNNN 300 NANPNNPNQT PPPEAAGSGG AGGASSSSTK EGSTAPPPPL SAAERVEHQR KKVKLLAMLD 360 EVDRRYNHYC EQMQMVVNSF DLVMGFGSAV PYTALAQKAM SRHFRCLKDA IAAQLKHSCE 420 LLGEKDPAAG GGVTKGETPR LRILEQSLRQ QRAFHQMGMM ETEAWRPQRG LPERSVNILR 480 AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEEA 540 SVNPDNNNKN SNEDMNDQDD LLDPSPRQND PAPIHHYTSA SEQHHTGASS RFSVIPQQGP 600 NMVMSAAAAA PQGYYHQRFH VEMMGADDPR RRDIGGSSAG TSGGFIGGGP GLIRFGTTTT 660 AGDVSLTLGL RQHSGNLPEK NSFFG*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MSQDYHHQEN IYSFSNGFER SEQQQILREK LGGGGGFPAP DENSGTGIPT VYETAGMLSE  60
MFSYPSGVSS ATQLLQQMGP PGFQDSREVQ PPAIQEWYTD RKDPNILEFR DVSTSDSAHH  120
HHQQQHHQRQ HHQQHQMTAI SVADSAAAAM QLFIMNPQSR SSTSPGQASA PPHSNTLHML  180
LPNNPNSGEF DTWGGGGEAQ GLSLSLASSL EAAKAEQFFF TQNHHHQQLQ QQQQTLHFNH  240
QMNNGLFVGP STSSPSSSSL TAMNMLRNSK YAKPTQELLE EFCSVGRGHF KKTKFRNNNN  300
NANPNNPNQT PPPEAAGSGG AGGASSSSTK EGSTAPPPPL SAAERVEHQR KKVKLLAMLD  360
EVDRRYNHYC EQMQMVVNSF DLVMGFGSAV PYTALAQKAM SRHFRCLKDA IAAQLKHSCE  420
LLGEKDPAAG GGVTKGETPR LRILEQSLRQ QRAFHQMGMM ETEAWRPQRG LPERSVNILR  480
AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEEEA  540
SVNPDNNNKN SNEDMNDQDD LLDPSPRQND PAPIHHYTSA SEQHHTGASS RFSVIPQQGP  600
NMVMSAAAAA PQGYYHQRFH VEMMGADDPR RRDIGGSSAG TSGGFIGGGP GLIRFGTTTT  660
AGDVSLTLGL RQHSGNLPEK NSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	471	529	5	63	Homeobox protein Meis2
3k2a_B	2e-16	471	529	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079108.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_012079109.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q94KL5	1e-149	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A067KJ17	0.0	A0A067KJ17_JATCU; Uncharacterized protein
STRING	cassava4.1_023603m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-132	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	Kalax.0044s0090.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]