PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0044s0109.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 632aa    MW: 68873.7 Da    PI: 9.4751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0044s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05106128123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0044s0109.1.p 106 FICEVCNKGFQREQNLQLHRRGH 128
                          89*******************88 PP
2zf-C2H212.40.00049182204123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Kalax.0044s0109.1.p 182 WKCDKCSKRYAVQSDWKAHSKTC 204
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-7105128No hitNo description
Gene3DG3DSA:3.30.160.607.1E-6105128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99106128IPR007087Zinc finger, C2H2
SMARTSM003550.0052106128IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-5106128IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SMARTSM00355160147177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4170203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-7177202No hitNo description
SMARTSM00355140182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLQFPTTILL DSICRIISSR IHHMAELRNM AASHSSSLSF FGASQDDHQQ MMSNQQILQQ  60
QNSSAPPQQA ATTPQKKRRN LPGNPIDPDA EVIALSPKTL MATNRFICEV CNKGFQREQN  120
LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS RALGDLTGIK KHFSRKHGEK  180
KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAQESSRH  240
PSGLSTIGSH LYGTPDQMNL SLNCQLPSAA SMLQPGTNTT RTPKFEHMNH ISSYGGQQYP  300
PQTVSSSGFF INDNPSSQGF HQDQSQHGMS ANKQPLFHGL LQISDHGQGN NSPTALSNMF  360
NLGYYAGNNA TSTNNNGFSS AANINMAMPE SLMRSEDHQV NNVALGSSNF SSMYNTSTNS  420
LQQADNMGLA PHMSATALLQ KAAQMGSTTS ANNSSLLRGF ASSTKSSDRS HPVGTTTNLV  480
SGNSARGVGE NLQSSSSIMD SGNNHLQSLM NSLANESSSV FKDGVHGQSG SFMSRMLTGS  540
NNSGDHVHHQ KNNMASNNNF GKGIMTSENE HKLTLDFLGV GGMVRSSMSG GFSQRSGEMH  600
QSVVEFNPLG DTDQLKRPAP ANLSYAGGKL H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33178242367Zinc finger protein JACKDAW
5b3h_F1e-33178242367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.11e-180protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.11e-180protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2K1YRN51e-174A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGVIT_01s0010g02090.t011e-172(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-123indeterminate(ID)-domain 4