PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0044s0109.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 631aa    MW: 68759.5 Da    PI: 9.5784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0044s0109.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05105127123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0044s0109.4.p 105 FICEVCNKGFQREQNLQLHRRGH 127
                          89*******************88 PP
2zf-C2H212.40.00049181203123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Kalax.0044s0109.4.p 181 WKCDKCSKRYAVQSDWKAHSKTC 203
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-6104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-7104127No hitNo description
PfamPF121713.1E-5105127IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM00355160146176IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4169202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-7176201No hitNo description
SMARTSM00355140181201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MLQFPTTILL DSICRIISSR IHHMAELRNM AASHSSSLSF FGASQDDHQQ MMSNQQILQQ  60
QNSSAPPQQA ATTPQKKRRN LPGNPNPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL  120
QLHRRGHNLP WKLKQKSTKE VKRKVYLCPE PTCVHHDPSR ALGDLTGIKK HFSRKHGEKK  180
WKCDKCSKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESSRHP  240
SGLSTIGSHL YGTPDQMNLS LNCQLPSAAS MLQPGTNTTR TPKFEHMNHI SSYGGQQYPP  300
QTVSSSGFFI NDNPSSQGFH QDQSQHGMSA NKQPLFHGLL QISDHGQGNN SPTALSNMFN  360
LGYYAGNNAT STNNNGFSSA ANINMAMPES LMRSEDHQVN NVALGSSNFS SMYNTSTNSL  420
QQADNMGLAP HMSATALLQK AAQMGSTTSA NNSSLLRGFA SSTKSSDRSH PVGTTTNLVS  480
GNSARGVGEN LQSSSSIMDS GNNHLQSLMN SLANESSSVF KDGVHGQSGS FMSRMLTGSN  540
NSGDHVHHQK NNMASNNNFG KGIMTSENEH KLTLDFLGVG GMVRSSMSGG FSQRSGEMHQ  600
SVVEFNPLGD TDQLKRPAPA NLSYAGGKLH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33177241367Zinc finger protein JACKDAW
5b3h_F1e-33177241367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2K1YRN51e-177A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGVIT_01s0010g02090.t011e-174(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-126indeterminate(ID)-domain 4