PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0044s0146.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 176aa MW: 20060.9 Da PI: 4.8381

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0044s0146.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.2e-31	112	170	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ ++Cpvkk+ver++edp++v++tYeg Hnh Kalax.0044s0146.1.p 112 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVEECPVKKRVERDREDPRYVITTYEGVHNHM 170 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	99	172	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-28	105	172	IPR003657	WRKY domain
PROSITE profile	PS50811	30.848	107	172	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	112	171	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	113	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MDGNSSDYHN QNMHMSFGSL DCGEVSHAIF ANNEFREDLL DDWFNESGES EVTGQDLGLQ 60 DPVHQMNQVN GLEVNYNAQD EEPDTRESGG RTGRAPVQSK VAFKTKSEIE ILDDGFKWRK 120 YGKKMVKNSP NPRNYYKCSV EECPVKKRVE RDREDPRYVI TTYEGVHNHM SPSGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	102	173	7	78	Probable WRKY transcription factor 4
2lex_A	1e-25	102	173	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085414.1	8e-49	probable WRKY transcription factor 50
Refseq	XP_027182807.1	8e-49	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	4e-44	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A3R5T0G4	6e-52	A0A3R5T0G4_PAELC; WRKY protein
STRING	VIT_04s0008g01470.t01	1e-47	(Vitis vinifera)
STRING	XP_008445519.1	8e-48	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-46	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Kalax.0044s0146.1.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]