PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0045s0020.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 365aa    MW: 41603.7 Da    PI: 4.8895
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0045s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35441352102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k++++++d+++++++sws+ g+sfvv+d++ f+++vLpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g++
  Kalax.0045s0020.2.p  44 FVTKTFDMVDDPSTTRIVSWSRGGQSFVVWDPHAFSTTVLPKYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLMGQR 124
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Kalax.0045s0020.2.p 125 HLLKYIRRRKV 135
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3838127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDPLRAVKEE YTGGGASSSG YGGGEALTAP QPMAGLHDAG PPPFVTKTFD MVDDPSTTRI  60
VSWSRGGQSF VVWDPHAFST TVLPKYFKHN NFSSFVRQLN TYGFRKIDPD RWEFANEGFL  120
MGQRHLLKYI RRRKVSGQPT PASQQDVVPC VEVGQYGTDG EVDRLRRDKQ ILMLELVKLR  180
QQQQNTRTYL QAMEQRIRGT EQKQQRMMAF LARAMQNPAF IHQLVQQKEK RKELEAAVSK  240
KRRWSIDQGC SQDVEGWNLS LIKAEPEEFQ EFGFEVSELE ALALEMQGYG RAGKARLEMI  300
ERRESMDKEL DEEFWEELLT GRLEGELDLD VPDTEDFGED EDFAGNFWAR TCGSSNICFQ  360
IGES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-243913612123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425668.11e-160heat stress transcription factor A-7a
RefseqXP_022759739.11e-160heat stress transcription factor A-7a-like
SwissprotQ6VBB21e-117HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A251N5G91e-159A0A251N5G9_PRUPE; Uncharacterized protein
STRINGEOX946441e-154(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-117heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]