PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0045s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 681aa    MW: 75133.4 Da    PI: 5.1319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0045s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14481527455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0045s0054.1.p 481 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 527
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-4913196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.79477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-19477545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.61E-17480531No hitNo description
PfamPF000104.7E-12481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18481544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAGVPPGTGG GRLQSSLQAS VQAIQWTYSI FWQLSPQNGN LVWADGYYNG AIKTRKTIQS  60
MEVSAEEASL QRSQQLRELF DSLSAGDASE APARRPSASL SPEDLTESEW FYLMCVSFSF  120
PLGVGLPGKA YAKRQHVWLT GANEVESKVF SRAILAKTVL CIPVADGVVE FGSTEMVSVY  180
GIQEDLGLVR HVKTFFHDYN RSQHAPPPKP ALSGHSTSNP ATSSQCFHSP PPFAGMSSNN  240
NHSNPGNNDE DEDEEEENEE PGGLDSEAGT GRVSSRVGGE VSELMQMEIS DQDIRVRSPE  300
DASNNLEPDF NVLPASRIQN NKDDGHFTTE SYKIDSARRW ALMQNQMRTG GVHLLQPPPF  360
SETQLLEDQT QEDSHYSHTV SSILHHHQQP PLPESSFSAG DLILSADSAF AEWTLYGDQV  420
AATTTGGAGS QWLLKFILFT VPYLHGKYHE ENEPCKSADM SEAAQQLKKG AGAPQEDMSV  480
NHVLAERRRR EKLNERFVIL RSLVPFVTKM DKASILGDTI EYLKQLRRKI QDLEVKAKQM  540
EVEQRSGLTS QDRTWSGTGS EKRKMRAVEV TGSPKPVTVV EPPPPPPPVE LLGLMEANTV  600
QVSIIETDAL VELQCPYREA LLLDVMMKLR DLRIEVTAVQ SSVTDGSFVA ELRAKVKENV  660
NGKKMKIAEV KRAIYQIIPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-20131789179Transcription factor MYC3
4rqw_B2e-20131789179Transcription factor MYC3
4rru_A4e-201317848218Transcription factor MYC3
4rs9_A2e-20131789179Transcription factor MYC3
4ywc_A4e-201317848218Transcription factor MYC3
4ywc_B4e-201317848218Transcription factor MYC3
4yz6_A2e-20131789179Transcription factor MYC3
5t0f_A2e-20131789179Transcription factor MYC3
5t0q_A2e-20131789179Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485490ERRRRE
2486491RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-79bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]