PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0045s0054.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 501aa    MW: 55679.4 Da    PI: 5.192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0045s0054.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14301347455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0045s0054.2.p 301 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 347
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-19297365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-16300351No hitNo description
PfamPF000103.1E-12301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-19301364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MIQEDLGLVR HVKTFFHDYN RSQHAPPPKP ALSGHSTSNP ATSSQCFHSP PPFAGMSSNN  60
NHSNPGNNDE DEDEEEENEE PGGLDSEAGT GRVSSRVGGE VSELMQMEIS DQDIRVRSPE  120
DASNNLEPDF NVLPASRIQN NKDDGHFTTE SYKIDSARRW ALMQNQMRTG GVHLLQPPPF  180
SETQLLEDQT QEDSHYSHTV SSILHHHQQP PLPESSFSAG DLILSADSAF AEWTLYGDQV  240
AATTTGGAGS QWLLKFILFT VPYLHGKYHE ENEPCKSADM SEAAQQLKKG AGAPQEDMSV  300
NHVLAERRRR EKLNERFVIL RSLVPFVTKM DKASILGDTI EYLKQLRRKI QDLEVKAKQM  360
EVEQRSGLTS QDRTWSGTGS EKRKMRAVEV TGSPKPVTVV EPPPPPPPVE LLGLMEANTV  420
QVSIIETDAL VELQCPYREA LLLDVMMKLR DLRIEVTAVQ SSVTDGSFVA ELRAKVKENV  480
NGKKMKIAEV KRAIYQIIPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14300350757Transcription factor MYC2
5gnj_B2e-14300350757Transcription factor MYC2
5gnj_E2e-14300350757Transcription factor MYC2
5gnj_F2e-14300350757Transcription factor MYC2
5gnj_G2e-14300350757Transcription factor MYC2
5gnj_I2e-14300350757Transcription factor MYC2
5gnj_M2e-14300350757Transcription factor MYC2
5gnj_N2e-14300350757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310ERRRRE
2306311RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-146basic helix-loop-helix protein A
TrEMBLA0A0C7DV441e-149A0A0C7DV44_RIBNI; BHLH3 protein (Fragment)
STRINGEOX947961e-145(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-52bHLH family protein