PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0045s0054.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 528aa    MW: 58528.6 Da    PI: 4.9475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0045s0054.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14328374455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0045s0054.3.p 328 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 374
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-11443IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-19324392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-16327378No hitNo description
PfamPF000103.4E-12328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18328391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDDQSARVQT VLCIPVADGV VEFGSTEMIQ EDLGLVRHVK TFFHDYNRSQ HAPPPKPALS  60
GHSTSNPATS SQCFHSPPPF AGMSSNNNHS NPGNNDEDED EEEENEEPGG LDSEAGTGRV  120
SSRVGGEVSE LMQMEISDQD IRVRSPEDAS NNLEPDFNVL PASRIQNNKD DGHFTTESYK  180
IDSARRWALM QNQMRTGGVH LLQPPPFSET QLLEDQTQED SHYSHTVSSI LHHHQQPPLP  240
ESSFSAGDLI LSADSAFAEW TLYGDQVAAT TTGGAGSQWL LKFILFTVPY LHGKYHEENE  300
PCKSADMSEA AQQLKKGAGA PQEDMSVNHV LAERRRREKL NERFVILRSL VPFVTKMDKA  360
SILGDTIEYL KQLRRKIQDL EVKAKQMEVE QRSGLTSQDR TWSGTGSEKR KMRAVEVTGS  420
PKPVTVVEPP PPPPPVELLG LMEANTVQVS IIETDALVEL QCPYREALLL DVMMKLRDLR  480
IEVTAVQSSV TDGSFVAELR AKVKENVNGK KMKIAEVKRA IYQIIPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14327377757Transcription factor MYC2
5gnj_B2e-14327377757Transcription factor MYC2
5gnj_E2e-14327377757Transcription factor MYC2
5gnj_F2e-14327377757Transcription factor MYC2
5gnj_G2e-14327377757Transcription factor MYC2
5gnj_I2e-14327377757Transcription factor MYC2
5gnj_M2e-14327377757Transcription factor MYC2
5gnj_N2e-14327377757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRE
2333338RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-161basic helix-loop-helix protein A
TrEMBLA0A0C7DV441e-165A0A0C7DV44_RIBNI; BHLH3 protein (Fragment)
STRINGEOX947961e-160(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-52bHLH family protein