PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 606aa    MW: 66318.7 Da    PI: 8.1942
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23112211399
                          EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+lt+sd+++ g +++p+ +a+++         ++ +  tl ++d +g++W++++i+r++++r++lt+GW++Fv+ ++L +gD+vvF+  
  Kalax.0046s0006.1.p 112 KTLTQSDANNGGGFSVPRFCADSFfprldytADPPVQ--TLHIKDVHGKVWKFRHIFRGTPRRHLLTTGWSSFVNHKQLVAGDSVVFM-- 197
                          89****************999999****997556555..8************************************************.. PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                          +  ++el+++ +r+
  Kalax.0046s0006.1.p 198 KAADGELFIGTRRA 211
                          55899999999986 PP
2Auxin_resp96.83.1e-32271353283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a  a+ +++Fev Y+Pra+++eF+vk++ v++al++++  Gm+fkm feted+s+ ++  Gt+v+ +++dp+rWp+S+Wr+L+
  Kalax.0046s0006.1.p 271 ALLAAGGKAFEVNYYPRATSAEFCVKASAVSAALRTQWRFGMKFKMPFETEDASRVSWfVGTIVAAQAADPLRWPKSPWRLLQ 353
                          56678899*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-33108213IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-18109196No hitNo description
SMARTSM010191.2E-16110212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125110212IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-26111215IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-21112211IPR003340B3 DNA binding domain
PfamPF065078.4E-28271353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MESCLDGGLW QVCAGNMLQV PQVDSNVVYF PQGHAEHANG IVNFKDFPEI PDMVVCKVSG  60
VKHMAEVETD ELFLRLRLVP LRISVTNLEL EEDNSVGHVG QDALVKSASV SKTLTQSDAN  120
NGGGFSVPRF CADSFFPRLD YTADPPVQTL HIKDVHGKVW KFRHIFRGTP RRHLLTTGWS  180
SFVNHKQLVA GDSVVFMKAA DGELFIGTRR AKRGIGGGKA QCGWTPAGGI WDWPDGSGCR  240
MFENGTTGTQ MSYGCSSVGG KVSVESVLEA ALLAAGGKAF EVNYYPRATS AEFCVKASAV  300
SAALRTQWRF GMKFKMPFET EDASRVSWFV GTIVAAQAAD PLRWPKSPWR LLQVTWDEPD  360
LLHSAKRVNP WMADLVVSGM PNMHLVPFSL PMKRLRPAQP PDLPLSSLRP APLQPRNPFV  420
SHLSYHPVAD NAPADIQGAR HVQCTQYPMN FHLNNVVQPF LFPQFRPPQA APPPPPGGVN  480
LTRPQRNEDM SCLLTLGNHP ETPMKNETKT TSTSIVLFGK HIHAEDKKSQ GSSDATVILS  540
DVIMEKVQVA SEGSRSGSVQ NGQKQCSSES RSPCCHSLLS TQMAPQAFSS LALEQTRCHL  600
CRLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-68537151385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316370.30.0auxin response factor 18
SwissprotQ653H71e-168ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G2YQ850.0A0A2G2YQ85_CAPAN; Auxin response factor
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-152auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]