PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0014.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 520aa    MW: 58263 Da    PI: 4.6517
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0014.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31e-5191361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++k+ gk +++ ++i+ +d+yk+ePw+Lp k k+k+++ ewyfFs  d+ky +g+++nrat++gyWk+tgk
  Kalax.0046s0014.2.p   9 LAPGFRFHPTDEELVRYYLRRKICGKGFRF-DAIAATDVYKSEPWELPgKsKLKSRDLEWYFFSMLDRKYGNGSKTNRATENGYWKTTGK 97 
                          579**************************9.99***************6347777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+ k ++vg+kktLv+++grap+g +++Wvmheyrl
  Kalax.0046s0014.2.p  98 DRPVLH-KAKTVGMKKTLVYHRGRAPHGARSNWVMHEYRL 136
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-616159IPR003441NAC domain
PROSITE profilePS5100557.2089159IPR003441NAC domain
PfamPF023655.2E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGRKPATSLA PGFRFHPTDE ELVRYYLRRK ICGKGFRFDA IAATDVYKSE PWELPGKSKL  60
KSRDLEWYFF SMLDRKYGNG SKTNRATENG YWKTTGKDRP VLHKAKTVGM KKTLVYHRGR  120
APHGARSNWV MHEYRLIDED LEKAGVLQDA FVLCRIFQKS GSGPKNGEQY GAPFEEEEWD  180
DDEVATVPGE QLTNEVVVFD NPYPEVGDVN TDADELVQNN YDISPSAPPP FDYCDDSGSY  240
LFDDQKPFIG EVKQVKEEHL VDSGENPLDA SYLLDEHYLN ANQEPVLNEG LFLETDDLIN  300
QMEPGPSDFD MLDEYLKYFD SADSNSTYVL PENGALPQTE SQVVATKSLL TPEVDKEIEY  360
LALKSQQLPD AQGSDVASSS SQCPEDTKFN SDYKHQFVNM LGKKPSPYSF STKDASLRLA  420
SSSHSSSSIH VTAGMVQIRN TDAFGNRLSW TFNKNGNIEV VLSLALPQTD GNSTSVDMLA  480
NMLSGKASSA MARVWFYFIV FWVFIISISF KMASLVSTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-47816519174NAC domain-containing protein 19
3swm_B3e-47816519174NAC domain-containing protein 19
3swm_C3e-47816519174NAC domain-containing protein 19
3swm_D3e-47816519174NAC domain-containing protein 19
3swp_A3e-47816519174NAC domain-containing protein 19
3swp_B3e-47816519174NAC domain-containing protein 19
3swp_C3e-47816519174NAC domain-containing protein 19
3swp_D3e-47816519174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125950.11e-178NAC domain-containing protein 78-like
SwissprotQ84K001e-142NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A161CG381e-178A0A161CG38_MORAL; NAC domain containing transcription factor 78-like protein
STRINGVIT_13s0019g05240.t011e-174(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-133NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]