PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0046s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 1001aa MW: 109376 Da PI: 6.2766

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0046s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.9e-29	603	653	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Kalax.0046s0033.1.p 603 EKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 653 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	592	673	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-26	605	653	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.48E-21	902	990	No hit	No description
PROSITE profile	PS51745	23.364	905	987	IPR000270	PB1 domain
SMART	SM00666	5.0E-24	905	987	IPR000270	PB1 domain
CDD	cd06407	4.06E-35	906	986	No hit	No description
Pfam	PF00564	7.1E-19	906	986	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.7E-23	906	986	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MAEPDDDKAS SGFPLHSHHQ SRSSRDPPPD SHHLMDLDLD LDSFWPLDQI SFATNPMSPL 60 LISSSDQPFS PLWAFSDADD DNKPSSASAK QAALSAAAAF RLPDYPRFLA LKSAYTDTTN 120 GIPADNDEKR RMQSLPPSSP LWGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK 180 NGGRYVLTTS EQPFVLDPHS SGLNRYRMVS LMYMFCVDEE SDGELGLPGR VFRQKLPEWT 240 PNVQYYSSRE YSRLDHALHY NVQGTLALPV FESSGQTCVG VVELILTSQK INYAPEVDKV 300 CKALEAVNLK SSNILDHPKP QIRNEGRQKA LAEILEVLSV VCESLKMPLA QTWVPCRHRN 360 VLADGGGLRK SCSSFDGSCM GQVCMSTSDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR 420 AFLSQSSCFC GDITKFSKTE YPLVHYARLF GVTSCFAICL CSSLTGNDEY ILEFFLPPTV 480 IDARDQHTLL NSLLETMKQH FRSLRVASGR NLGEDMIEIV EGSADEKLLE SVRRSHSASP 540 PAPDTTNGRE TCNKISTVNL VLEEANGSNN AMNAAGLGGI TSGGTLMRNT VTKKPERKRG 600 KTEKTISLDV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL 660 KRVIESVQGS ESTFGLTSLS PTPLPAAGCS MSWAANANGS NLPNSPGLRT AGLQGLKSES 720 PECKSPISDG KDGNGVHLPG SKTLDPEGCP NEENEYIPKI SKTSSGSREG SAGSPTSHGS 780 CQGSAPHETN VAQYSKTPEL CEPYINIGAP LRNHQGKELD LAMTNFVPDT RLSTQAQEPF 840 EGLLVADVGS SKNLRNLCPS IADAHIEDRL PECSWTNSHV PIPASEPATT ANPTPHLTGR 900 RDSVTLTIKA TYKDDIIRFR FLSNSGIVEL REEVAKRLKL EVGTFDIKYL DDDHELVLIV 960 CDADLQECFD VSRSSGSLMI RLSVHDITTN LGSSCESTGE *

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MAEPDDDKAS SGFPLHSHHQ SRSSRDPPPD SHHLMDLDLD LDSFWPLDQI SFATNPMSPL  60
LISSSDQPFS PLWAFSDADD DNKPSSASAK QAALSAAAAF RLPDYPRFLA LKSAYTDTTN  120
GIPADNDEKR RMQSLPPSSP LWGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK  180
NGGRYVLTTS EQPFVLDPHS SGLNRYRMVS LMYMFCVDEE SDGELGLPGR VFRQKLPEWT  240
PNVQYYSSRE YSRLDHALHY NVQGTLALPV FESSGQTCVG VVELILTSQK INYAPEVDKV  300
CKALEAVNLK SSNILDHPKP QIRNEGRQKA LAEILEVLSV VCESLKMPLA QTWVPCRHRN  360
VLADGGGLRK SCSSFDGSCM GQVCMSTSDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR  420
AFLSQSSCFC GDITKFSKTE YPLVHYARLF GVTSCFAICL CSSLTGNDEY ILEFFLPPTV  480
IDARDQHTLL NSLLETMKQH FRSLRVASGR NLGEDMIEIV EGSADEKLLE SVRRSHSASP  540
PAPDTTNGRE TCNKISTVNL VLEEANGSNN AMNAAGLGGI TSGGTLMRNT VTKKPERKRG  600
KTEKTISLDV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL  660
KRVIESVQGS ESTFGLTSLS PTPLPAAGCS MSWAANANGS NLPNSPGLRT AGLQGLKSES  720
PECKSPISDG KDGNGVHLPG SKTLDPEGCP NEENEYIPKI SKTSSGSREG SAGSPTSHGS  780
CQGSAPHETN VAQYSKTPEL CEPYINIGAP LRNHQGKELD LAMTNFVPDT RLSTQAQEPF  840
EGLLVADVGS SKNLRNLCPS IADAHIEDRL PECSWTNSHV PIPASEPATT ANPTPHLTGR  900
RDSVTLTIKA TYKDDIIRFR FLSNSGIVEL REEVAKRLKL EVGTFDIKYL DDDHELVLIV  960
CDADLQECFD VSRSSGSLMI RLSVHDITTN LGSSCESTGE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659716.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	F6HU52	0.0	F6HU52_VITVI; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Kalax.0046s0033.1.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]