PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0046s0094.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YB

Protein Properties

Length: 136aa MW: 14874.5 Da PI: 4.8549

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0046s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.2	3.7e-56	22	117	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 reqdrflPianvsr+mkk+lPanakisk+aketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGf++y epl+vyl+kyr Kalax.0046s0094.1.p 22 REQDRFLPIANVSRLMKKALPANAKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMGTLGFDEYDEPLRVYLQKYR 111 89************************************************************************************** PP NF-YB 92 elegek 97 +egek Kalax.0046s0094.1.p 112 VIEGEK 117 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-51	19	128	IPR009072	Histone-fold
SuperFamily	SSF47113	6.68E-39	24	128	IPR009072	Histone-fold
Pfam	PF00808	2.4E-27	27	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.1E-21	55	73	No hit	No description
PROSITE pattern	PS00685	0	58	74	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.1E-21	74	92	No hit	No description
PRINTS	PR00615	4.1E-21	93	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MADSDNDSGG NYDGIAHDFL AREQDRFLPI ANVSRLMKKA LPANAKISKE AKETVQECVS 60 EFISFVTGEA SDKCQREKRK TINGDDLLWA MGTLGFDEYD EPLRVYLQKY RVIEGEKSAG 120 GKPGERDGHS GGGNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-45	21	111	6	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657477.1	1e-70	PREDICTED: nuclear transcription factor Y subunit B-3
Swissprot	O23310	3e-67	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A0H3XSM1	1e-69	A0A0H3XSM1_VERFO; Nuclear transcription factor Y subunit B-11
STRING	VIT_12s0057g01010.t01	9e-69	(Vitis vinifera)
STRING	XP_010252766.1	4e-69	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-63	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Kalax.0046s0094.1.p

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]