PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0101.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 617aa    MW: 66354 Da    PI: 6.4228
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00022042123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kalax.0046s0101.1.p 20 HVCTLCGKGFRSGKALGGHMRVH 42
                         79*******************99 PP
2zf-C2H211.60.0008690108321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kalax.0046s0101.1.p  90 CPICRRDFPSNKALFGHMR 108
                          ******************8 PP
3zf-C2H2120.00065403425123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs++  L  H ++H
  Kalax.0046s0101.1.p 403 YKCTTCSKTFSSHQALGGHKSSH 425
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-41943IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.25E-72042No hitNo description
PROSITE profilePS5015711.242047IPR007087Zinc finger, C2H2
PfamPF139124.6E-82042IPR007087Zinc finger, C2H2
SMARTSM003550.00632042IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SuperFamilySSF576671.25E-783110No hitNo description
PROSITE profilePS501578.62188115IPR007087Zinc finger, C2H2
SMARTSM003550.08988110IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-689112IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-5400427No hitNo description
PfamPF139126.6E-9402426IPR007087Zinc finger, C2H2
SMARTSM003550.033403425IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261403430IPR007087Zinc finger, C2H2
PROSITE patternPS000280405425IPR007087Zinc finger, C2H2
PfamPF139122.0E-7479503IPR007087Zinc finger, C2H2
SMARTSM003553.1479501IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280481501IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MPERSCESDS MRDKEVEEEH VCTLCGKGFR SGKALGGHMR VHAQRHKSDQ LKTSVVVDRA  60
AADGSCDMDD VDEEDDDELQ MKDGGGKPIC PICRRDFPSN KALFGHMRCH PERKWRGIQP  120
PVYSSSSTVS DVQAHSSSSS SHKSDHNDGD PFKSGVTDLE KDLLNFGWGA KARRGREGTV  180
KSIAPEQAAG VQNLILLSRG GVDVKSGNKA EVGAEIKSKP LPAGPAAIRD STNFTRKLKL  240
CSAEVESRGR VDHDSQKRMR KKRKTSQVLT TEEVSGLTNS GKKSKLADEE VEGSHDDGTQ  300
DLMIVESNPL HQLSGRRPPM ISATEAGADV MPLEKVDASP HGYNAAELMQ ADLIETKKTQ  360
KVRKYLMISD LKPMSANLPH SSPVNPPALH QDINTEVSDN ERYKCTTCSK TFSSHQALGG  420
HKSSHNKLRN PQGFRNDHPH PDSVTTQGGD SGKVDAGAGH ISGLIMAAAG AATPVHPMHQ  480
CNVCFKIYPT GQALGGHKRL HCSLTTNKTL PLPPPSMIVS EPPEAAPLPP PPSMIVSEPE  540
EAASFHPPAP PLAQASDNDH GVVGRFDLNE LPAVEDEDDQ QAVIQPVDNI AAQPQEAAGH  600
DKDAHEPGDS PAALDY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255263QKRMRKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-17C2H2 family protein