PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0047s0054.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 276aa MW: 30294 Da PI: 9.6682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0047s0054.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.3	8.3e-14	79	123	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Kalax.0047s0054.1.p 79 PWTEEEHKLFLIGLHKVGKGDWRGISKNYVKTRTPTQVASHAQKY 123 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.971	72	128	IPR017930	Myb domain
SuperFamily	SSF46689	4.64E-17	74	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-16	75	126	IPR006447	Myb domain, plants
SMART	SM00717	3.5E-9	76	126	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-10	78	123	IPR009057	Homeodomain-like
CDD	cd00167	1.99E-9	79	124	No hit	No description
Pfam	PF00249	1.2E-11	79	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MSSEPVDGGG EIMLFGVRVA VDCMRKSVSL NNLSQYRQHL PKEGEADKSA LADYDSADEA 60 AVGHHQPSAG GRERKRGVPW TEEEHKLFLI GLHKVGKGDW RGISKNYVKT RTPTQVASHA 120 QKYFLRRTNL NRRRRRSSLF DITTDTVTAM PMEENIITTK QDKIQALPPA PEMSNNGFHP 180 EMGYIFHGTA IGKPMEHLSV AQVRNQTVNG AGQAAMGSPK TGLNLNTAPM SSDPHALSLS 240 LSLSYDHSYS NQSTRNRQYQ VMQGLGNGDS FITVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169474.1	1e-71	LOW QUALITY PROTEIN: transcription factor MYB1R1-like
Swissprot	Q2V9B0	6e-63	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A444XY95	8e-71	A0A444XY95_ARAHY; Uncharacterized protein
STRING	XP_006476696.1	3e-68	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	2e-54	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0047s0054.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]