PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0048s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 567aa    MW: 61984.6 Da    PI: 5.4477
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0048s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix105.63.5e-33298382186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k evlaLi++r+++e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf +l+
  Kalax.0048s0053.1.p 298 RWPKVEVLALIKLRSNLENRYQEAGPKGPLWEEISAGMQRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFYELD 382
                          8*********************************************************************8.99999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.399291355IPR017877Myb-like domain
SMARTSM007170.0012295357IPR001005SANT/Myb domain
PfamPF138371.2E-23297384No hitNo description
Gene3DG3DSA:1.10.10.605.5E-4297354IPR009057Homeodomain-like
CDDcd122035.82E-31298362No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MTSSGPPTTS PVSVGVGGGT SGVGMQRGVM QQPYTMYSRD LSTGAGVAVR GSGPPPAPAV  60
GISFSSDSSS SGSFDSDEDE EEVDDMSEEE RPSSNPAGSG QKRKKGYSSR GGHKRRMMGF  120
FEGLMKQVVQ KQEAMQQRFL ETIEKRELDR MVREEAWKRQ EAARLSREQE LMAQERATAA  180
TRDAAIVSFL QKITGQTIQL PQPVPTTTVH QHVDPTIPPA PASASIPSST PQQPRQQSQQ  240
KPHKQQQQQP QNSDLIRQHQ MPPPSTEVIM AVPERQIPPQ DPASGGGGGS SSEAASSRWP  300
KVEVLALIKL RSNLENRYQE AGPKGPLWEE ISAGMQRMGY NRSSKRCKEK WENINKYFKK  360
VKESNKKRPE DAKTCPYFYE LDAIYQKKIL GGANTGSSSG SMVPFQQQQP QQSLALEGST  420
TTAKHQDTSV SNPGTVQTSA THAESINKTD GTDLLVQPHK GGLPDDIFGD RGGHARAGGG  480
STKPEDIMME LMKQQQVQQL LNLEDYEQQK MDELGDTTDN VEEDQGEAED ESEEDRMAHE  540
IDFQRPPTDN KNGGNNGAPS FITMVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039268.21e-133PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBLA0A061G9R21e-130A0A061G9R2_THECC; Duplicated homeodomain-like superfamily protein, putative isoform 1
STRINGEOY237691e-131(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein