PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0108.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 180aa    MW: 19689.3 Da    PI: 7.3011
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601421.8e-4471061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca+Ck+lrr+CakdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r+da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql
  Kalax.0049s0108.1.p   7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFATVHKVFGASNVSKMLQELPLHQRSDAVSSLVYEASARMRDPVYGCVGAISYLQSQVSQL 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la++++e
  Kalax.0049s0108.1.p  97 QMQLAVAQAE 106
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9556107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAGGNSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFATVH KVFGASNVSK MLQELPLHQR  60
SDAVSSLVYE ASARMRDPVY GCVGAISYLQ SQVSQLQMQL AVAQAEILCI QMQQEPAAAS  120
SLATIQPTLS VDDKSFLFNN SLIGNNNINQ LSQLFNYSAS STTNVINDYS LRDRESLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-5031087112LOB family transfactor Ramosa2.1
5ly0_B2e-5031087112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417985.17e-86PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW39e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A200PX252e-84A0A200PX25_9MAGN; Uncharacterized protein
TrEMBLA0A444EI832e-84A0A444EI83_ENSVE; Uncharacterized protein
TrEMBLM0U1B02e-84M0U1B0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18030_0013e-85(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-62LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]