PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0152.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 404aa    MW: 44262.5 Da    PI: 5.0935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0152.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.6e-08351396345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwq 45 
                          +W++ E+  l  +vk+ G g+Wk+I +       +Rt  ++k++w+
  Kalax.0049s0152.2.p 351 KWSKREEATLRAGVKRVGAGSWKKIFNLYRntfVNRTTMDLKDKWR 396
                          7********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.26E-12347398IPR009057Homeodomain-like
SMARTSM007175.4E-4348401IPR001005SANT/Myb domain
CDDcd116601.31E-14350399No hitNo description
PfamPF002493.4E-6351397IPR001005SANT/Myb domain
PROSITE profilePS500907.259351399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-9351396IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MESQDAVAPS IAPDEACASA VKDAELLIDS ARNPAGKEIM EDRPLPLTDG TDGTLAEVTG  60
VVPRRTYRRL TDAEALILYQ MLKRREREIQ LQIEGGMADP LPTVGVSDPL PAPEVVNEAR  120
TPITLLKNAE NVASFDSNHV IDIPSSLEMD AEEVAAVETP LTKEASYRDQ CEEEVAARET  180
PVTNKASSSQ MCAEEASTRA THLTENPSSS KVYVNEASAG ETNANHVIDI PSTPEMDVEE  240
VAALETLVTN KASSSQVYAE EASTREAHLT ENPSSSKVYL EEALTRETRL THHPTSSKLY  300
VEEGASSVIP MTKDASSSRA VRYNLRKRGP NARKYKENEG SRFVGRRKII KWSKREEATL  360
RAGVKRVGAG SWKKIFNLYR NTFVNRTTMD LKDKWRVITG GTA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-08MYB_related family protein