PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0051s0102.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 261aa    MW: 28824.2 Da    PI: 5.4112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0051s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Kalax.0051s0102.1.p 19 KGAWSVEEDIKLMAYVTKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 66
                         79******************99************************97 PP
2Myb_DNA-binding47.83.2e-1572114145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+ T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w+
  Kalax.0051s0102.1.p  72 RGNYTKEEEDTIIRLHESVGNK-WSVIAAQLP-GRTDNEIKNHWH 114
                          899*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3911466IPR017930Myb domain
SuperFamilySSF466892.8E-2916113IPR009057Homeodomain-like
SMARTSM007177.5E-81868IPR001005SANT/Myb domain
PfamPF002491.0E-121966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-222073IPR009057Homeodomain-like
CDDcd001679.67E-82166No hitNo description
PROSITE profilePS5129422.8467121IPR017930Myb domain
SMARTSM007171.3E-1471119IPR001005SANT/Myb domain
PfamPF002494.2E-1472114IPR001005SANT/Myb domain
CDDcd001675.11E-1074114No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2474121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRRPATATA AAIDSGLRKG AWSVEEDIKL MAYVTKYGCW NWRQLPKFAG LARCGKSCRL  60
RWLNYLKPDL KRGNYTKEEE DTIIRLHESV GNKWSVIAAQ LPGRTDNEIK NHWHAKLKKM  120
LKTTPSLKDK SKATTSSLTS EEVSSTCSTY KGLTDLEADK TPTDDSVSCC FQGQQKQSSS  180
SSASSSSDDM YSDMSGDLWK DLFAADGTYN YVGPADDYFH YVDSFAAAAD IGYEGLLSFP  240
CPSDVPTADE DEFLVPLWLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26171235110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296898.15e-67transcription factor MYB4-like
RefseqXP_021689975.14e-67transcription factor MYB30-like
TrEMBLA0A1U8JVI81e-64A0A1U8JVI8_GOSHI; myb-related protein Myb4-like
STRINGEOX992624e-64(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-52myb domain protein 13