PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0051s0106.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 236aa MW: 26029.7 Da PI: 6.3438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0051s0106.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00063	105	146	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+r+ ++ L++l+P + ++ a+ e++ +YIk L Kalax.0051s0106.1.p 105 LARQRRSRMSDKTRCLQKLIPLE-----RQMDTATLYEETYKYIKFL 146 569*******************8.....6799999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.043	97	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-5	100	151	No hit	No description
SuperFamily	SSF47459	3.14E-9	102	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-5	103	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-7	104	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MNQKDALFPA NAAAAEDEGR ANFDAICYSG GVDLSRLLMP SFDNTNITSS SSSFPYTPLL 60 PPPAASLFSD TYNHPAAPLP RPHLIMTTPK QHLPLPATVV PSSALARQRR SRMSDKTRCL 120 QKLIPLERQM DTATLYEETY KYIKFLEAQI SVLLSMPVQA PCSPDLLQLV DVYGGLGRLN 180 RQQMLQVLVN SQVAQTLMYT NGWCVFSAEQ LSSSSLLTHN HQNDQDTAVV EQQFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043370.2	6e-42	PREDICTED: transcription factor bHLH117
Refseq	XP_021298831.1	9e-42	transcription factor bHLH117
TrEMBL	A0A061E4F6	2e-40	A0A061E4F6_THECC; DNA binding-like protein
STRING	EOX99201	4e-41	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	4e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0051s0106.1.p