PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 329aa    MW: 36967.3 Da    PI: 6.6057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.92.8e-32151062102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+++++ d++++ li w + +nsf+v+d+ ef+++vLp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ 
  Kalax.0052s0004.1.p  15 FVMKTFRMVCDPATDALICWGRGSNSFLVFDPLEFSHRVLPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQV 95 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k+
  Kalax.0052s0004.1.p  96 HLLRNIVRRKH 106
                          ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-4911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-3512104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.1E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2815104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDQAVMDGSD TIAPFVMKTF RMVCDPATDA LICWGRGSNS FLVFDPLEFS HRVLPVYFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANEWF LRGQVHLLRN IVRRKHHSRA SSSASRVVEE  120
MCGDEDQDVL VEISKLKEEQ RSIEMEIQDM TRRLDATERR PQQMMAFLHR AVEDPEIVPR  180
MMLEKDKHQQ QHSQQRRRVI SDSPDKKRRL LFNATSSSSS SSMATTIKTE DEDDANLTTG  240
SSPDQPGWCQ SPELSSSSVW FNNPLGSIHP AARAGGSGIR SAPGSAAYGG DKSSSDRYGG  300
AFGYIQDDAD LGANPTPPYP FSLFRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-27610411120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024181902.11e-106heat stress transcription factor C-1-like
TrEMBLA0A2P6RJF41e-104A0A2P6RJF4_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRINGXP_004287427.11e-103(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-77heat shock transcription factor C1