PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 455aa    MW: 49597 Da    PI: 8.3568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-13305351455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kalax.0052s0052.1.p 305 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 351
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-4051218IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.44E-15300355No hitNo description
SuperFamilySSF474591.96E-19301371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.333301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10305351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-18305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-16307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGDKFRVSDE ERAAVEAVVG AGASHFLTSS ASETGFRDLA ASSNCVDSSV HHALSRLVAG  60
DSDWNYLVFW RASRSKGNGS ALVWGDGHCG GANAQNPRLS EEEKLRREKV VRLIQKWFGK  120
SVNKNGLLSN LELFYLVSMC YSFSSESASG PGQVYKYSRA VWAVDKCQEQ YESRAHLAKL  180
AGLKTVVFVP VKEGVVEIGS VAAVAEEKKV LQMIEGLFGC PESVLPKIFG QDLSLGGSNS  240
RSMSISFSPK VEEGGGIGVS QFYGSTVSGQ GGGLGFEQFR DEEGDDRKPR KRGRKPANGR  300
EQPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYITDL QSKIRMLETE  360
KDAPKAQAQA QAVPEFEFQA RQDDAIVRVS HPLDGHPVSR VIKALRENQM TPGPEMCDVS  420
ITNNDMVVHT FSIRTQGGAA AEHVKEKLLA ALSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-29299369272Transcription factor MYC2
5gnj_B2e-29299369272Transcription factor MYC2
5gnj_E2e-29299369272Transcription factor MYC2
5gnj_F2e-29299369272Transcription factor MYC2
5gnj_G2e-29299369272Transcription factor MYC2
5gnj_I2e-29299369272Transcription factor MYC2
5gnj_M2e-29299369272Transcription factor MYC2
5gnj_N2e-29299369272Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286294RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107222.11e-151transcription factor bHLH3-like
SwissprotO234871e-138BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A2R6QU121e-150A0A2R6QU12_ACTCH; Transcription factor bHLH3 like
STRINGVIT_07s0141g01060.t011e-149(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]