PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0074.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 304aa    MW: 34123.4 Da    PI: 6.3709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.7e-49111531129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                          lppGfrF Ptdeelv++yL kkv  ++                      + e+d+++vePw+Lp+ +k + +ewyfFs rd+kyatg r+
  Kalax.0052s0074.1.p  11 LPPGFRFYPTDEELVCHYLSKKVIMESdtaA---AyedevealknkgmSLVEIDLHTVEPWQLPEVAKLNATEWYFFSFRDRKYATGFRT 97 
                          79********************988885551...23455666667774599*************88888999****************** PP

                  NAM  75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          nrat+sgyWkatgkd+++l+  ++++vg++ktLvfyk+rap+g kt W+mhe+rle
  Kalax.0052s0074.1.p  98 NRATTSGYWKATGKDRTILDPsTHTVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 153
                          ********************966778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-568171IPR003441NAC domain
PROSITE profilePS5100554.61511171IPR003441NAC domain
PfamPF023652.3E-2712152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMGLKEVGAR LPPGFRFYPT DEELVCHYLS KKVIMESDTA AAYEDEVEAL KNKGMSLVEI  60
DLHTVEPWQL PEVAKLNATE WYFFSFRDRK YATGFRTNRA TTSGYWKATG KDRTILDPST  120
HTVVGMRKTL VFYKNRAPNG IKTGWIMHEF RLETPHLPPK EDWVLCRVFH KTKISAEHHN  180
CSDNLSCCQP NVAMLPCVIS HNQISSFSSK QNSNMVSNHM GLLNNSSHHN AIFKFGVQPE  240
DKNPATAASS VTEMTSVDGG GGEGRGDYDF LWDMNLEEIN SLGPSNEQGT LQDQMDANSL  300
SFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4621714165NO APICAL MERISTEM PROTEIN
1ut4_B4e-4621714165NO APICAL MERISTEM PROTEIN
1ut7_A4e-4621714165NO APICAL MERISTEM PROTEIN
1ut7_B4e-4621714165NO APICAL MERISTEM PROTEIN
4dul_A4e-4621714165NAC domain-containing protein 19
4dul_B4e-4621714165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8748411e-33KF874841.1 Boehmeria nivea NAC domain-containing protein (NAC17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023907574.11e-107NAC domain-containing protein 21/22-like
TrEMBLA0A1S2XUB51e-104A0A1S2XUB5_CICAR; NAC domain-containing protein 21/22
STRINGXP_004493788.11e-105(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-92NAC domain containing protein 74