PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0053s0137.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 340aa    MW: 37389 Da    PI: 7.6866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0053s0137.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09202249455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++++P +    +k   Ka +L ++++Y++ Lq
  Kalax.0053s0137.1.p 202 SHSLAERVRREKIGQRMRILQDVVPGC----NKITGKAGMLDETINYVQVLQ 249
                          8**************************....999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.50E-10196253No hitNo description
SuperFamilySSF474592.09E-16196264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-15198260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.907198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6202249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-8204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTPDCFGSSG DLTRNGSEMT VIERQQTQMK FLQQQHQSSA GETQYNDQAR IIQASQQTQS  60
LTKGDLGLLN PCLGWPELVH LSMPKEILHS SSDNVHDRCS FEMSTLTIAF STGVPYRTAT  120
LENEGGDIVV APKSSLEIVK DSLKKRKADQ WPNPKQSIHM KGGTSINKQV VPDASKENSK  180
TSEDTKPEYI HVRARRGQAT DSHSLAERVR REKIGQRMRI LQDVVPGCNK ITGKAGMLDE  240
TINYVQVLQR QVEFLSMKLA TVTIAHDFNN IINIPSAVHT GVAVTDAISH AHLFFNQSYA  300
SNITETGQNS FDTARGSTMS TPTSVQKYFL DAAGFTVSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-44bHLH family protein