PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0054s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 230aa    MW: 25051.8 Da    PI: 8.2082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0054s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1863112255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + + +r++lg++ tae Aa a+++a+++++g
  Kalax.0054s0078.1.p  63 HYRGVRQRP-WGKFAAEIRDP---N-KaARVWLGTYSTAEAAALAYDEAALRFKG 112
                          7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-3262121IPR001471AP2/ERF domain
SMARTSM003801.5E-3663126IPR001471AP2/ERF domain
CDDcd000181.99E-1963121No hitNo description
PROSITE profilePS5103223.69663120IPR001471AP2/ERF domain
PfamPF008474.1E-1363112IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2163121IPR016177DNA-binding domain
PRINTSPR003672.7E-106475IPR001471AP2/ERF domain
PRINTSPR003672.7E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSGDEELFPM YSTRSQQDMC VMVSALSRVI GNSSDDSTSL ALPLPMPPPP DFATGSPSLL  60
RRHYRGVRQR PWGKFAAEIR DPNKAARVWL GTYSTAEAAA LAYDEAALRF KGSKAKLNFP  120
ERVEYVHQTT PQLLSPSQPS SLHPLQRNPH SYDVLGSNPD SNIRMKPSAA TTTQSWSPTT  180
MSFSSVSSSS SSSSSSLQEP NQPTCPSMSH YGGPGATNWS YNDNQPEYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2762123163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437444.12e-50PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH544e-47EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1J3DYB08e-49A0A1J3DYB0_NOCCA; Uncharacterized protein
STRINGXP_010457918.15e-47(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]