PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0055s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15011.3 Da    PI: 9.5365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0055s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.5e-171261149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                         krie+  +r++tfskRr g++KKAeELS L++  va + fs+t  kl+ +
  Kalax.0055s0025.1.p 12 KRIEDLNKRYITFSKRRPGLFKKAEELSELTGCGVAALAFSPTAkKLHKF 61
                         79***************************************985256665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-20464IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.806456IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-18576IPR002100Transcription factor, MADS-box
CDDcd001201.28E-23562No hitNo description
PRINTSPR004044.9E-13626IPR002100Transcription factor, MADS-box
PfamPF003194.1E-181361IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-132641IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-134162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGGTGKKKIE IKRIEDLNKR YITFSKRRPG LFKKAEELSE LTGCGVAALA FSPTAKKLHK  60
FGEMALIDRY LEDTGAGQGQ VALGWESGNQ NEVSVEAALR FLAGKNLGAI YDLGELVEMR  120
SVLGRIRECL VQHLNSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102916.14e-17agamous-like MADS-box protein AGL29
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-16AGAMOUS-like 71