PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0055s0040.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 405aa MW: 44091.2 Da PI: 7.1684

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0055s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115	9.6e-36	36	154	2	106
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaes 77 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ ++++ +++++++ Kalax.0055s0040.1.p 36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKVAIDELAELppwhptattiiptaTTTATNASSQQE 125 79**************************************************************98888776555443222222222222 PP TCP 78 ssssasnsssg.......kaaksaakskksqksaas 106 + + + a++ + +++++++ ++ Kalax.0055s0040.1.p 126 RMI-------HgqvansmEDANDYTIQHQQHERVEN 154 222.......23332222333333333333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-34	36	149	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.962	38	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MGERSSQRQT TSRLGMRNSG GGEIIEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA 60 HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK VAIDELAELP PWHPTATTII PTATTTATNA 120 SSQQERMIHG QVANSMEDAN DYTIQHQQHE RVENENNPSF LPPSMDSDSI ADTIKTFFPM 180 GASAEPTSGS GMQFYPPDLL SRTSSSQNNQ DLRLSLQSFQ DSQFLHSHHH QQHPGQTPQA 240 IFSGNQLGFD ASSGGGGWSD HQSTDINRFH RLMAWNNAGG DSAGGSGGGG GSGGFMFNSL 300 PPPPLSQPSL QQLFGQSGHF FTQRGPLQSS NTSSVRAWID QPIANHHQHH QTLHDHSSTL 360 SGIGNFQIPG AFPGFRIPAR IQGDNEEQDN IHNKPSSASS DSRH*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MGERSSQRQT TSRLGMRNSG GGEIIEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK VAIDELAELP PWHPTATTII PTATTTATNA  120
SSQQERMIHG QVANSMEDAN DYTIQHQQHE RVENENNPSF LPPSMDSDSI ADTIKTFFPM  180
GASAEPTSGS GMQFYPPDLL SRTSSSQNNQ DLRLSLQSFQ DSQFLHSHHH QQHPGQTPQA  240
IFSGNQLGFD ASSGGGGWSD HQSTDINRFH RLMAWNNAGG DSAGGSGGGG GSGGFMFNSL  300
PPPPLSQPSL QQLFGQSGHF FTQRGPLQSS NTSSVRAWID QPIANHHQHH QTLHDHSSTL  360
SGIGNFQIPG AFPGFRIPAR IQGDNEEQDN IHNKPSSASS DSRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	43	96	1	54	Putative transcription factor PCF6
5zkt_B	1e-20	43	96	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021652538.1	1e-137	transcription factor TCP4
Swissprot	Q8LPR5	1e-101	TCP4_ARATH; Transcription factor TCP4
TrEMBL	A0A067KVJ7	1e-131	A0A067KVJ7_JATCU; Uncharacterized protein
TrEMBL	A0A2K2CA04	1e-132	A0A2K2CA04_POPTR; Uncharacterized protein
STRING	POPTR_0001s38480.1	1e-131	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	5e-84	TCP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0055s0040.1.p

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]