PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0055s0091.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Whirly
Protein Properties Length: 232aa    MW: 25492.6 Da    PI: 8.8772
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0055s0091.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.82.6e-60571942139
               Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                          v+k+kaal+v +v+ptf +ldsg l+l+r+G ++l++ +a++erkydWek+qsfalsatev++l+ l++++sceffhdp++k+sn+G+vr
  Kalax.0055s0091.3.p  57 VFKGKAALSVSPVLPTFRKLDSGGLQLDRRGVMMLNIWPAIGERKYDWEKRQSFALSATEVGSLLTLGPQDSCEFFHDPSMKTSNAGQVR 146
                          9***************************************************************************************** PP

               Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                          k+l+++  +d sG+f++lsv n+++k+ e+++vPv+ aefav+r++++
  Kalax.0055s0091.3.p 147 KSLSIKANADNSGYFFSLSVANNILKTSERLTVPVTSAEFAVMRTAFS 194
                          *********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.7E-7345208IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.04E-6349213IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-5957191IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MQVLICPGCC LIWYCLWRCS IPLLFSIVSL LSLLSFSHLS SLSADNPSSK VYAPFTVFKG  60
KAALSVSPVL PTFRKLDSGG LQLDRRGVMM LNIWPAIGER KYDWEKRQSF ALSATEVGSL  120
LTLGPQDSCE FFHDPSMKTS NAGQVRKSLS IKANADNSGY FFSLSVANNI LKTSERLTVP  180
VTSAEFAVMR TAFSFALPHI MGWDRIACQL SAGVSYSTKA APLVKDMEWD R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A5e-89442094169StWhy2
3n1i_A5e-89442094169protein StWhy2
3n1j_A5e-89442094169Protein StWhy2
3n1k_A5e-89442094169protein StWhy2
3n1l_A5e-89442094169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511179.14e-95PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X5
RefseqXP_016511180.14e-95PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X6
RefseqXP_019236148.15e-95PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X6
SwissprotD9J0343e-93WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S4DCL11e-93A0A1S4DCL1_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X6
TrEMBLA0A1S4DD981e-93A0A1S4DD98_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial isoform X5
STRINGXP_009772771.13e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-87WHIRLY 2