PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0055s0112.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 385aa MW: 42481 Da PI: 6.8453

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0055s0112.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.1e-09	134	154	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg Kalax.0055s0112.1.p 134 ACPEFRK-GSCRRGDTCEFAHG 154 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	129	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.507	129	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-7	134	154	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-5	134	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4	164	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.554	164	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MMIGELPRTH PTIQIPPVWD PYEDPTAEIN SPFPVNGSSP SSGPFGSPDY SNPFSVPDSF 60 GYVLSNEPEP DMFDDDFSDL PLDAFSGDNF RMYDFKVRRC ARGRSHDWTE CPFAHPGEKA 120 RRRDPRRYGY SGTACPEFRK GSCRRGDTCE FAHGVFECWL HPDRYRTQAC KDGQGCRRRI 180 CFFAHSPDQL RVMSLQSPRK GLVSSNSADS YDGSPLRRSS FDSYIGGISN NNKASSFGSS 240 SPPTSPPSSP PQLSSSYNSV HELVSNMRNL QLAKAKLSPG SVWGGMSSMG SPRGSSNLRP 300 GFLSLPTTPT RIPARSGLAQ FEQWDSSNNN NRACEEEPVM ERVESGRDLR AKIYAKLSKE 360 NSFGPVNGSQ LTDPDVGWIS DLVE*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MMIGELPRTH PTIQIPPVWD PYEDPTAEIN SPFPVNGSSP SSGPFGSPDY SNPFSVPDSF  60
GYVLSNEPEP DMFDDDFSDL PLDAFSGDNF RMYDFKVRRC ARGRSHDWTE CPFAHPGEKA  120
RRRDPRRYGY SGTACPEFRK GSCRRGDTCE FAHGVFECWL HPDRYRTQAC KDGQGCRRRI  180
CFFAHSPDQL RVMSLQSPRK GLVSSNSADS YDGSPLRRSS FDSYIGGISN NNKASSFGSS  240
SPPTSPPSSP PQLSSSYNSV HELVSNMRNL QLAKAKLSPG SVWGGMSSMG SPRGSSNLRP  300
GFLSLPTTPT RIPARSGLAQ FEQWDSSNNN NRACEEEPVM ERVESGRDLR AKIYAKLSKE  360
NSFGPVNGSQ LTDPDVGWIS DLVE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275926.1	1e-143	PREDICTED: zinc finger CCCH domain-containing protein 23
Swissprot	Q9M0G2	1e-107	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A5BHR5	1e-142	A5BHR5_VITVI; Uncharacterized protein
TrEMBL	F6H381	1e-142	F6H381_VITVI; Uncharacterized protein
STRING	VIT_04s0008g00610.t01	1e-143	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	2e-96	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0055s0112.1.p

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]