PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0055s0113.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 256aa MW: 29412.5 Da PI: 5.9946

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0055s0113.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Kalax.0055s0113.2.p 86 RQRWTPTPQQLQRLEQLFDQgNGTPSKQKIKEITDELtkhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	96.4	2.4e-31	85	148	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp+Q++ Le+l+++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Kalax.0055s0113.2.p 85 TRQRWTPTPQQLQRLEQLFDQGNGTPSKQKIKEITDELTKHGQISETNVYNWFQNRRARSKRKQ 148 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.613	82	147	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-17	83	151	IPR009057	Homeodomain-like
SMART	SM00389	2.8E-13	84	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-18	85	150	IPR009057	Homeodomain-like
CDD	cd00086	1.07E-13	86	148	No hit	No description
Pfam	PF00046	1.7E-19	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEWEKKQTQL VEQSNQGGGG DMYMKVMTDE QMELLRHQIS AYTAISERLV DMHKTISAQQ 60 DLAGIRLGSL YCDPLMTSAG HKIPTRQRWT PTPQQLQRLE QLFDQGNGTP SKQKIKEITD 120 ELTKHGQISE TNVYNWFQNR RARSKRKQSV SATHNGDSEV ETEVESPRDK KTKPENIQSF 180 ETSSTRLPNI YFQNSDAGHD MFHSENGLRS SNDLDHFSMY DNELTNPRFD QFISKIEVPG 240 NFSHFGYDGD YDMIH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-107	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	3e-82	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A438ETD4	1e-106	A0A438ETD4_VITVI; WUSCHEL-related homeobox 8
TrEMBL	D7UDB5	1e-106	D7UDB5_VITVI; Uncharacterized protein
STRING	VIT_18s0122g01140.t01	1e-106	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-70	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Kalax.0055s0113.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]