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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Kalax.0055s0121.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 178aa MW: 20513 Da PI: 9.127 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 85.3 | 9.3e-27 | 75 | 161 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
Yn+YA + GF +rk+ s +s+rnge++++++vC+keg+++ ++ +++++r rtgC+ak+++ ++ +gkw+v+k++ eHnH+l+
Kalax.0055s0121.1.p 75 AYNHYAARRGFGIRKHFSARSRRNGEVIRKEYVCNKEGFKNVVPQT-IDHKKRRRDARTGCQAKMEIGQK-SGKWVVDKFSDEHNHPLT 161
5*****************************************9999.89999999*************99.****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 9.1E-25 | 75 | 161 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 178 aa Download sequence Send to blast |
MDQPNNNPQP TETETRLENF MDYGSVLSNN LMEDAPIQMD SGNTDNTIVR DASCEKVVDS 60 LLGKYFDTME EAYDAYNHYA ARRGFGIRKH FSARSRRNGE VIRKEYVCNK EGFKNVVPQT 120 IDHKKRRRDA RTGCQAKMEI GQKSGKWVVD KFSDEHNHPL TSPNKVMKHR SHCKYHK* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021978544.1 | 7e-34 | protein FAR1-RELATED SEQUENCE 7-like | ||||
| Refseq | XP_023733474.1 | 2e-34 | protein FAR1-RELATED SEQUENCE 7-like | ||||
| Refseq | XP_023737438.1 | 2e-34 | protein FAR1-RELATED SEQUENCE 7-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G07500.1 | 7e-23 | FAR1 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Kalax.0055s0121.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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