PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0056s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 431aa    MW: 48462.2 Da    PI: 6.6547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0056s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-17154200148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W+ e d ll+++v+++G + W++Ia++++ gR +kqc++rw+++l
  Kalax.0056s0046.1.p 154 KGQWSLEQDMLLIQLVERYGIRKWSLIAQMLP-GRIGKQCRERWHNHL 200
                          799*****************************.*************97 PP
2Myb_DNA-binding58.31.8e-18224264345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEde+l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Kalax.0056s0046.1.p 224 IWSEEEDEILIRAHKEIGNK-WSEIAKRLP-GRTENSIKNHWN 264
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-22148205IPR009057Homeodomain-like
PROSITE profilePS5129426.496149204IPR017930Myb domain
SuperFamilySSF466891.9E-30151263IPR009057Homeodomain-like
SMARTSM007171.9E-15153202IPR001005SANT/Myb domain
PfamPF002499.2E-16154200IPR001005SANT/Myb domain
CDDcd001671.99E-14157200No hitNo description
PROSITE profilePS5129421.258217271IPR017930Myb domain
SMARTSM007172.0E-16221269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-19225265IPR009057Homeodomain-like
PfamPF002491.7E-16225264IPR001005SANT/Myb domain
CDDcd001673.02E-14225267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIDDRIFEFW WHRTLRALVT LLQDTWSNKA HDSATIVKLV DVGHDNYSTR PSIGSSSSGL  60
DAFSPYDRFL SGDPAYGLIP GRASPLLDSF CSYGQMARFY ARGSGYQELE PVSNIMAMGN  120
SNVAPDEVSN VAAHGDRSRA RRKGANKASQ DVIKGQWSLE QDMLLIQLVE RYGIRKWSLI  180
AQMLPGRIGK QCRERWHNHL RPDIKVFDFV LPHLTAHLKL YKDIWSEEED EILIRAHKEI  240
GNKWSEIAKR LPGRTENSIK NHWNATKRKQ NAKRKTRSKN PKSSSLLLQY IRGLNCSSSD  300
GSTTKPCDPR KKGARSRASE NEGKSPEHQG RIQVVDCGLE FSSEDRLVPD YGEFGDVPDL  360
DFMDDDKLFG EDGSIDSFLD SIEFLPSFDD GGNGEEKHDI GAADRGAEER DGGGVRRDMD  420
LVEMISQQVK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-391512701104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-391522702104C-Myb DNA-Binding Domain
1msf_C1e-391522702104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7L27e-67MYB98_ARATH; Transcription factor MYB98
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-69myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]