PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0056s0083.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 246aa MW: 26616.8 Da PI: 9.6055

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0056s0083.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42	2.2e-13	70	114	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE++ ++ + k+ G+g+W+ I++ + k Rt+ q+ s+ qky Kalax.0056s0083.1.p 70 PWSEEEHKCFLTGLKKVGKGDWRGISKNFVKSRTPTQVASHAQKY 114 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.518	63	119	IPR017930	Myb domain
SuperFamily	SSF46689	3.36E-16	65	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-16	66	117	IPR006447	Myb domain, plants
SMART	SM00717	3.5E-10	67	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-11	69	113	IPR009057	Homeodomain-like
Pfam	PF00249	7.5E-11	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	3.73E-9	70	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAAEGSKEFL LFGFRIAVDP MRKTASMNNL SDYQHVADLG KGPEKENPAD GCASDSAGRV 60 AARERKRGTP WSEEEHKCFL TGLKKVGKGD WRGISKNFVK SRTPTQVASH AQKYFLRHNT 120 VKHRRRTSLF DITAETVSGQ PTEELCEATL RDSASSQIHS PATNSPNAVV QPLVDPSSVL 180 TQHPLLIHPS PPPALQSVPS PNSSSPANYS LNLSLSLSSY SQTSPYRALQ TTPGLTTKDS 240 YISVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281003.1	2e-55	transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-41	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	D9ZJ86	4e-54	D9ZJ86_MALDO; MYBR domain class transcription factor
STRING	XP_008374494.1	7e-55	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-43	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0056s0083.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]