PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0056s0122.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 107aa MW: 11462.8 Da PI: 8.9349

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0056s0122.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.2	1.9e-33	35	91	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY eC+kNhAa++Gg+avDGC+Efm+s g egt++al+CaACgCHRnFHR+eve+e Kalax.0056s0122.1.p 35 IVRYGECQKNHAANVGGYAVDGCREFMAS-GMEGTSEALRCAACGCHRNFHRKEVETE 91 589***********************9.999*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-29	34	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-30	36	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.6E-27	37	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.749	38	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MKKQRQVGLR KDASKRSSSS SASGRGRMMT TTSSIVRYGE CQKNHAANVG GYAVDGCREF 60 MASGMEGTSE ALRCAACGCH RNFHRKEVET EVVCECSPPH SSNSNV*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, such as ZHD5, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by preventing the expression of genes involved in gibberellic acid (GA), auxin and brassinosteroid signaling and by promoting the expression of abscisic acid (ABA)-responsive genes. Regulates several development aspects, including photomorphogenesis, apical dominance, longevity, flower morphology and fertility, as well as root and stem elongation. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:16412086, ECO:0000269\|PubMed:21059647, ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080548.1	9e-44	mini zinc finger protein 3
Swissprot	Q9CA51	3e-38	MIF1_ARATH; Mini zinc finger protein 1
TrEMBL	A0A067KG85	1e-41	A0A067KG85_JATCU; Uncharacterized protein
STRING	cassava4.1_020102m	4e-41	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	5e-40	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	Kalax.0056s0122.1.p