PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 273aa    MW: 29602 Da    PI: 9.9288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08168208954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Kalax.0057s0048.1.p 168 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-14163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6169208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-6182213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDMMMMLQMD KIPTEYFAAY NENHAYHSSG FSSSMGLFSN NNGATGNSSA GRGCNNNGAN  60
ITSQFYDSHP PSGTAASSTL SFGNPNGHPI APHFLYNTGN GNKWKASSGD VEDNPFASPA  120
QKRNSVAAMR EMIFRIAAMQ PIHIDPESVK PPKRRNVKIS KDPQSVAARH RRERISERIR  180
ILQRLVPGGT KMDTASMLDE AIHYVKFLKT QVQSLERAQG SSNTNSSNGT IGFPVTMPSS  240
NHHNSSNGSY LTMGKVYQTA AAPQSVQHYG DA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282817.17e-78PREDICTED: transcription factor HEC1
TrEMBLE0CPU42e-76E0CPU4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10400.t013e-77(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-41bHLH family protein