PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0050.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 355aa    MW: 38005.1 Da    PI: 5.9566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67.2e-16173219455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Kalax.0057s0050.1.p 173 VHNLSEKRRRSRINEKLKALQKLIPNS-----NKSDKASMLDEAIEYLKQLQ 219
                          6*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-19166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-20166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.708169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.22E-18172223No hitNo description
PfamPF000101.8E-13173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MADLYGTNAY SPTASSSSAS LPLESEDLST FLQHLLHQSS TSSSCMPFRG KPVSFGSVPE  60
GVTAAGLHNS MDAERDGVGR MGIGPSTFVA PSLEINFAEP GGYFATGVDD VSRKGFSFVG  120
GLTTGDQVDK EFRLEKDLNE FTFENEDGAG ASEVPTNPLK SRSSSKRSRA AEVHNLSEKR  180
RRSRINEKLK ALQKLIPNSN KSDKASMLDE AIEYLKQLQL QVQMLSMRNG VSLHPLCIPG  240
VAQPLHMSHE GTSYGGGHNM LSGANDMLNS ISPTGNFSLN QEASVPPPFE VSNHGNSSNQ  300
PVRPTLSSIP NSEIAFGFDP ALEAHYKSFN FCSQSKDPKT DGTLHLESSN TSQG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-39bHLH family protein