PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 295aa    MW: 33016.4 Da    PI: 10.2956
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34.1e-21115174357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+ +Le l++   r+p+a+++e++++kl    +++ ++V++WFqN++a+e++
  Kalax.0057s0054.1.p 115 TRWNPTQEQIGILEMLYKGgMRTPNAHQIEQITHKLakygKIEGKNVFYWFQNHKARERQ 174
                          7*****************99**************************************97 PP
2Wus_type_Homeobox1161.8e-37115175464
    Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqk
  Kalax.0057s0054.1.p 115 TRWNPTQEQIGILEMLYKGGMRTPNAHQIEQITHKLAKYGKIEGKNVFYWFQNHKARERQK 175
                          8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.009110175IPR001356Homeobox domain
SuperFamilySSF466893.59E-11110178IPR009057Homeodomain-like
SMARTSM003891.8E-5112179IPR001356Homeobox domain
CDDcd000865.92E-4115175No hitNo description
PfamPF000468.4E-19115174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-7116174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MIKGSSSMKV HQFPRGFWDH IIHPAQQPSS LPSSFSSESS SSAAAVCKRL RSPAPKMAAH  60
ANNHNNSTAT SLDLKSFIRP DSGPRRLSAS SDRNLTCTKH DQQPDAQVET HPGGTRWNPT  120
QEQIGILEML YKGGMRTPNA HQIEQITHKL AKYGKIEGKN VFYWFQNHKA RERQKIKRER  180
LGRTPHSPAP MIPLPLPLPL PLPVPVPAAP VTVKASNNIK TMLNMDMAAK EEHLVCVSEG  240
VQKRRCRSWT FDEEANDDRE AAWNNNSRSC RSDDEGSGCR TLQLFPLYPE SRKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-57WUSCHEL related homeobox 4