PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 156aa    MW: 17486.8 Da    PI: 9.2088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-172877255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  Kalax.0057s0055.1.p 28 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFLLRG 77
                         69*****99.**********9...336*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.0492885IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-202886IPR016177DNA-binding domain
SMARTSM003806.6E-352891IPR001471AP2/ERF domain
CDDcd000189.86E-262986No hitNo description
PRINTSPR003671.2E-112940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-302986IPR001471AP2/ERF domain
PfamPF008473.0E-102976IPR001471AP2/ERF domain
PRINTSPR003671.2E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MMGGGERAEC CVNTEARARK QRRQQDKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYTT  60
PIAAARAYDT AVFLLRGPSA RLNFPECIAK EDDEMREVSA AFIRKKATEV GARVDAHETA  120
GGVQVAMAIS ESNSRRVVIK PDLNEYPSPD DSDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-152585263ATERF1
3gcc_A3e-152585263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614221.12e-70PREDICTED: ethylene-responsive transcription factor ERF010-like
RefseqXP_016455711.12e-70PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ8LC306e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A1S3YTX44e-69A0A1S3YTX4_TOBAC; ethylene-responsive transcription factor ERF010-like
STRINGXP_009614221.17e-70(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-51related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]