PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0116.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 355aa    MW: 39699.4 Da    PI: 4.6232
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-082863202155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          + +yps+++++eL + +gL  +q+++WF N+R ++
  Kalax.0057s0116.1.p 286 NWPYPSEADKAELERATGLHPKQISNWFINQRKRH 320
                          569*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.2E-15152203IPR005541KNOX2
PfamPF037912.9E-18157202IPR005541KNOX2
PROSITE profilePS5007111.888260323IPR001356Homeobox domain
SMARTSM003895.6E-12262327IPR001356Homeobox domain
SuperFamilySSF466892.14E-16263329IPR009057Homeodomain-like
CDDcd000863.28E-12263323No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23267323IPR009057Homeodomain-like
PfamPF059203.3E-16280319IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMEEIDMSYP DHMAPEAVLD QYPSSALMTP EHMMLPYDYQ SFISSELFHH ICLAGGELVS  60
SPPSSQLFDL EADSSVGAMA TDCPADANCQ AHPIQENEDV EEELVIKSEI LHHPLFPRMR  120
RAYADCQMSA SGGGPLETSF SDETEPWKDN VSTLILGSDP ELDEFMETYC EMLEKHNEDL  180
RNTFTGASAF LNEMEMQLAD LCGALSKTSL CDQPAAATGN IAADHQASKC NNKAKSDLKM  240
SLLSKYRGGH LNNLKLEFSK RTKKKMGKLP GQARQALLHW WESHHNWPYP SEADKAELER  300
ATGLHPKQIS NWFINQRKRH WKTPPESLQY SCNDNDLLSA GTVVHFADED FDAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-66KNOTTED-like from Arabidopsis thaliana 2