PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0151.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 605aa    MW: 67145 Da    PI: 5.6771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0151.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.4e-054184511755
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++f+ L++l+P++      K +K++ L  ++ Y+k+L+
  Kalax.0057s0151.1.p 418 DERFSALQSLIPSN-----DKADKVTLLDATISYLKELE 451
                          689**********8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-517190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.429401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-4405456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-9417466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9417463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-5417455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGGSEKLRKQ LALAARCNQW SYAIYWSISI TQPSVLEWGS GYYSGDIKTR KTTQFEELNT  60
DMFNSKRSEQ LRELYESLVA GDSNSHARRP STALSPEDLT DAEWYYLVCM SFVFNIGQGL  120
PGRTFEVGQP IWLCNAHLAE SQVFIRSLLA KSASIQTVVC FPFSGGVVEI GITELVPEDM  180
NLIERIKALF LDNFRPQSTV PDTSLPSGLL NNDMELAGVE PDHDYLEANL DPIVECKELD  240
SLSTYDSASN VAADQLADSF MLTDGASHVQ GWHFADEDFS NCVHHSFNSS NCISQTFALS  300
AKAKLSPKIE NLCEHHIPCP MERTKLESDD LHYQGVISTL LKNSDLLDLD PRIGCCKKGS  360
SFVKWSFVGR AGSSWSSNSM SQVMLRKVLF EVGRNTGCAP VGRTEAVDRY EHSLDVLDER  420
FSALQSLIPS NDKADKVTLL DATISYLKEL EKRVEKLESS KESTYLLNTP MATKSQVTVE  480
RTSDNYGRTS NKNKPSTNKR KASYIDQVEP QNIAKTSRDN STDVICVSMV DNNVMIEMRC  540
CWRECLLLKV MDAMSSLGLD SHMVQSSTSA NGILQLTIKS KFKGSGCASV GVIRQKLKRI  600
LAQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-17819012192Transcription factor MYC3
4rqw_B5e-17819012192Transcription factor MYC3
4rs9_A5e-17819012192Transcription factor MYC3
4yz6_A5e-17819012192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040249.20.0PREDICTED: transcription factor EGL1
TrEMBLA0A061GCJ10.0A0A061GCJ1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY247500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-141bHLH family protein