PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0059s0087.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23922.5 Da    PI: 5.2241
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0059s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-201569256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          kR++f+++q++ Le lF ++++p  +++++LA+ lgL  rqV +WFqNrRa+ +
  Kalax.0059s0087.1.p 15 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLR 69
                         58***************************************************87 PP
2HD-ZIP_I/II111.36.5e-3615107193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ek+rr+s++q+k+LE  F +e+k ep+ K++la++Lgl+prqva+WFqnrRAR ++kq+E++y  Lk+++d+l++e e L+ke+++L ++
  Kalax.0059s0087.1.p  15 EKRRRFSEKQIKSLEILFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLRSKQIEREYGILKASHDTLASEFECLKKEKQTLDAQ 104
                          699*************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Kalax.0059s0087.1.p 105 VQA 107
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-18672IPR009057Homeodomain-like
PROSITE profilePS5007117.8151171IPR001356Homeobox domain
SMARTSM003897.7E-161375IPR001356Homeobox domain
PfamPF000461.9E-171569IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-191677IPR009057Homeodomain-like
CDDcd000862.10E-141672No hitNo description
PRINTSPR000311.1E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000311.1E-55167IPR000047Helix-turn-helix motif
PfamPF021832.8E-1671112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMSLEMGGSG GGKNEKRRRF SEKQIKSLEI LFGSESKPEP RTKQQLASDL GLHPRQVAIW  60
FQNRRARLRS KQIEREYGIL KASHDTLASE FECLKKEKQT LDAQVQALRD QLRTDEGNTA  120
GSALPSKQSW RNEEPEIEDY FHESKGKPTY VLESYNYETN NKSNPEEDYI LNLAEPVDSS  180
LTSSENSWDS SCFLDQKCSS SLLWEFWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419EKRRRF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP468972e-43ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2N9FZI81e-47A0A2N9FZI8_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-45homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]