PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0060s0114.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 947aa MW: 107071 Da PI: 6.4603

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0060s0114.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.8	2.2e-49	50	164	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 e k+rwl+++ei+aiL n+ + ++ ++ + pksg++ L++rkk+r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++n+ Kalax.0060s0114.1.p 50 EaKSRWLRPNEIHAILCNHVYFPIHVKPVNLPKSGEIHLFDRKKLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNA 139 559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 tf rrcywlL++++e+ivlvhy+e+ Kalax.0060s0114.1.p 140 TFVRRCYWLLDKSMEHIVLVHYRET 164 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.417	44	170	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-70	47	165	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.7E-44	50	163	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.4E-6	393	482	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.07E-15	395	482	IPR014756	Immunoglobulin E-set
CDD	cd00603	1.75E-4	395	482	No hit	No description
Pfam	PF01833	3.7E-7	395	481	IPR002909	IPT domain
CDD	cd00204	1.52E-17	554	690	No hit	No description
SuperFamily	SSF48403	2.18E-17	575	691	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-17	577	692	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	4.0E-8	581	660	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.441	598	690	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3.5E-6	631	660	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.728	631	663	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.98E-7	764	845	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	38	794	816	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.071	795	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.062	797	815	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0017	817	839	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.908	818	842	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.7E-4	821	839	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7	899	921	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	901	929	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.086	902	921	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MSAFGVDQLF DFVGSEEIGG LVMEPVLLDG FQIHGFRTMN ELDLKSIFEE AKSRWLRPNE 60 IHAILCNHVY FPIHVKPVNL PKSGEIHLFD RKKLRNFRKD GHNWKKKNDG KTVKEAHEHL 120 KVGNEERIHV YYAHGQDNAT FVRRCYWLLD KSMEHIVLVH YRETCELLDS STAPVNSNSS 180 SGLTELHVPF LTYEETESGS QQSNTSNQLE YIESIENVTA VTLERRLREI NTLDWDELLV 240 DTDPSVPIAY EEGKSGGFQQ QNPVMINVSK DDGSALLMNL PTELSSGWHS ACPETRSDSI 300 NGDILDGSYN HAVHSQLMME AAPNNSGTLF GGQSFSITQG GGGQDQDRRW MNSSLTVESP 360 GSVNDSIHES SISSAQNSMV PTIMDQPQSA DQIFTITDIS PEWAFSCEKT KILLTGYFHQ 420 GFGNLLNSNL YCVCGSSCVP VEIVQTGVMR CILPPHSPGQ FDLYLSTERL KPVSQLKTFE 480 YRSSLQADQN IPSDNLSDWD EFRNKMRLVR LLFSSSKTLN ILSAKVSEHT VNEAKKFSEK 540 TSHTASSWAL LKQSVDENKI SLHQAEEILF EQAIRNRLQD WLLERIIEEQ SPSDYDEKGL 600 GVLHLCAILN YTWAVYLYSK SGLSLDFRDK YGWTALHWAA YYGREDIVGA LLSAGARPNL 660 VTDPTPLIPG GCTASDLAAQ KGHNGLAAYL GEEALVDHFN DMALAGNASG SIEFQRTCSV 720 KRETVYDEAS CLKDTLAAYR TAADAAARIN AAFREQSLKL RTEAVQGSNP EDEARTIISA 780 MRIQHAFRSF ESRKKMAAAL RIQYGFRTWK TRRDFLNMRQ QAIKIQAVFR GFQVRRHYRK 840 IIWSVGVLEK AVLRWRFKRR GFRGLQVAPV QEITSVAQEQ ENDVEEDFFV LGRKQAEDRV 900 ESAVIKVQAM FRSKQAQQEY RRMKWAHNQA KIEYEGFFNH NAKMES*

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MSAFGVDQLF DFVGSEEIGG LVMEPVLLDG FQIHGFRTMN ELDLKSIFEE AKSRWLRPNE  60
IHAILCNHVY FPIHVKPVNL PKSGEIHLFD RKKLRNFRKD GHNWKKKNDG KTVKEAHEHL  120
KVGNEERIHV YYAHGQDNAT FVRRCYWLLD KSMEHIVLVH YRETCELLDS STAPVNSNSS  180
SGLTELHVPF LTYEETESGS QQSNTSNQLE YIESIENVTA VTLERRLREI NTLDWDELLV  240
DTDPSVPIAY EEGKSGGFQQ QNPVMINVSK DDGSALLMNL PTELSSGWHS ACPETRSDSI  300
NGDILDGSYN HAVHSQLMME AAPNNSGTLF GGQSFSITQG GGGQDQDRRW MNSSLTVESP  360
GSVNDSIHES SISSAQNSMV PTIMDQPQSA DQIFTITDIS PEWAFSCEKT KILLTGYFHQ  420
GFGNLLNSNL YCVCGSSCVP VEIVQTGVMR CILPPHSPGQ FDLYLSTERL KPVSQLKTFE  480
YRSSLQADQN IPSDNLSDWD EFRNKMRLVR LLFSSSKTLN ILSAKVSEHT VNEAKKFSEK  540
TSHTASSWAL LKQSVDENKI SLHQAEEILF EQAIRNRLQD WLLERIIEEQ SPSDYDEKGL  600
GVLHLCAILN YTWAVYLYSK SGLSLDFRDK YGWTALHWAA YYGREDIVGA LLSAGARPNL  660
VTDPTPLIPG GCTASDLAAQ KGHNGLAAYL GEEALVDHFN DMALAGNASG SIEFQRTCSV  720
KRETVYDEAS CLKDTLAAYR TAADAAARIN AAFREQSLKL RTEAVQGSNP EDEARTIISA  780
MRIQHAFRSF ESRKKMAAAL RIQYGFRTWK TRRDFLNMRQ QAIKIQAVFR GFQVRRHYRK  840
IIWSVGVLEK AVLRWRFKRR GFRGLQVAPV QEITSVAQEQ ENDVEEDFFV LGRKQAEDRV  900
ESAVIKVQAM FRSKQAQQEY RRMKWAHNQA KIEYEGFFNH NAKMES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	106	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272118.2	0.0	PREDICTED: calmodulin-binding transcription activator 6 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1R3GK40	0.0	A0A1R3GK40_9ROSI; IQ motif, EF-hand binding site
TrEMBL	D7SY49	0.0	D7SY49_VITVI; Uncharacterized protein
STRING	VIT_05s0077g01240.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Kalax.0060s0114.1.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]