PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0060s0114.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 913aa MW: 103320 Da PI: 6.6538

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0060s0114.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.9	2e-49	16	130	4	117
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 e k+rwl+++ei+aiL n+ + ++ ++ + pksg++ L++rkk+r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+++n+ Kalax.0060s0114.3.p 16 EaKSRWLRPNEIHAILCNHVYFPIHVKPVNLPKSGEIHLFDRKKLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNA 105 559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 tf rrcywlL++++e+ivlvhy+e+ Kalax.0060s0114.3.p 106 TFVRRCYWLLDKSMEHIVLVHYRET 130 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.417	10	136	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.0E-70	13	131	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-44	16	129	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.1E-6	359	448	IPR013783	Immunoglobulin-like fold
CDD	cd00603	1.68E-4	361	448	No hit	No description
SuperFamily	SSF81296	4.9E-15	361	448	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.6E-7	361	447	IPR002909	IPT domain
CDD	cd00204	1.43E-17	520	656	No hit	No description
SuperFamily	SSF48403	2.02E-17	541	657	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-17	546	658	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.8E-8	547	626	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.441	564	656	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3.5E-6	597	626	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.728	597	629	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.25E-7	736	811	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	38	760	782	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.071	761	790	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.059	763	781	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0017	783	805	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.908	784	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.5E-4	787	805	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7	865	887	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	867	895	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.083	868	887	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MLCDCAELDL KSIFEEAKSR WLRPNEIHAI LCNHVYFPIH VKPVNLPKSG EIHLFDRKKL 60 RNFRKDGHNW KKKNDGKTVK EAHEHLKVGN EERIHVYYAH GQDNATFVRR CYWLLDKSME 120 HIVLVHYRET CELLDSSTAP VNSNSSSGLT ELHVPFLTYE ETESGSQQSN TSNQLEYIES 180 IENVTAVTLE RRLREINTLD WDELLVDTDP SVPIAYEEGK SGGFQQQNPV MINVSKDDGS 240 ALLMNLPTEL SSGWHSACPE TRSDSINGDI LDGSYNHAVH SQLMMEAAPN NSGTLFGGQS 300 FSITQGGGGQ DQDRRWMNSS LTVESPGSVN DSIHESSISS AQNSMVPTIM DQPQSADQIF 360 TITDISPEWA FSCEKTKILL TGYFHQGFGN LLNSNLYCVC GSSCVPVEIV QTGVMRCILP 420 PHSPGQFDLY LSTERLKPVS QLKTFEYRSS LQADQNIPSD NLSDWDEFRN KMRLVRLLFS 480 SSKTLNILSA KVSEHTVNEA KKFSEKTSHT ASSWALLKQS VDENKISLHQ AEEILFEQAI 540 RNRLQDWLLE RIIEEQSPSD YDEKGLGVLH LCAILNYTWA VYLYSKSGLS LDFRDKYGWT 600 ALHWAAYYGR EDIVGALLSA GARPNLVTDP TPLIPGGCTA SDLAAQKGHN GLAAYLGEEA 660 LVDHFNDMAL AGNASGSIEF QRTCSVKRET VYDEASCLKD TLAAYRTAAD AAARINAAFR 720 EQSLKLRTEA VQGSNPEDEA RTIISAMRIQ HAFRSFESRK KMAAALRIQY GFRTWKTRRD 780 FLNMRQQAIK IQAVFRGFQV RRHYRKIIWS VGVLEKAVLR WRFKRRGFRG LQVAPVQEIT 840 SVAQEQENDV EEDFFVLGRK QAEDRVESAV IKVQAMFRSK QAQQEYRRMK WAHNQAKIEY 900 EGFFNHNAKM ES*

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MLCDCAELDL KSIFEEAKSR WLRPNEIHAI LCNHVYFPIH VKPVNLPKSG EIHLFDRKKL  60
RNFRKDGHNW KKKNDGKTVK EAHEHLKVGN EERIHVYYAH GQDNATFVRR CYWLLDKSME  120
HIVLVHYRET CELLDSSTAP VNSNSSSGLT ELHVPFLTYE ETESGSQQSN TSNQLEYIES  180
IENVTAVTLE RRLREINTLD WDELLVDTDP SVPIAYEEGK SGGFQQQNPV MINVSKDDGS  240
ALLMNLPTEL SSGWHSACPE TRSDSINGDI LDGSYNHAVH SQLMMEAAPN NSGTLFGGQS  300
FSITQGGGGQ DQDRRWMNSS LTVESPGSVN DSIHESSISS AQNSMVPTIM DQPQSADQIF  360
TITDISPEWA FSCEKTKILL TGYFHQGFGN LLNSNLYCVC GSSCVPVEIV QTGVMRCILP  420
PHSPGQFDLY LSTERLKPVS QLKTFEYRSS LQADQNIPSD NLSDWDEFRN KMRLVRLLFS  480
SSKTLNILSA KVSEHTVNEA KKFSEKTSHT ASSWALLKQS VDENKISLHQ AEEILFEQAI  540
RNRLQDWLLE RIIEEQSPSD YDEKGLGVLH LCAILNYTWA VYLYSKSGLS LDFRDKYGWT  600
ALHWAAYYGR EDIVGALLSA GARPNLVTDP TPLIPGGCTA SDLAAQKGHN GLAAYLGEEA  660
LVDHFNDMAL AGNASGSIEF QRTCSVKRET VYDEASCLKD TLAAYRTAAD AAARINAAFR  720
EQSLKLRTEA VQGSNPEDEA RTIISAMRIQ HAFRSFESRK KMAAALRIQY GFRTWKTRRD  780
FLNMRQQAIK IQAVFRGFQV RRHYRKIIWS VGVLEKAVLR WRFKRRGFRG LQVAPVQEIT  840
SVAQEQENDV EEDFFVLGRK QAEDRVESAV IKVQAMFRSK QAQQEYRRMK WAHNQAKIEY  900
EGFFNHNAKM ES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	72	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272118.2	0.0	PREDICTED: calmodulin-binding transcription activator 6 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1R3GK40	0.0	A0A1R3GK40_9ROSI; IQ motif, EF-hand binding site
STRING	VIT_05s0077g01240.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Kalax.0060s0114.3.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]