PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0060s0118.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 162aa    MW: 17068.2 Da    PI: 10.3104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0060s0118.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.5e-184680135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         Cs Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Kalax.0060s0118.1.p 46 CSDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 80
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-1340101IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1764076IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-134179No hitNo description
Gene3DG3DSA:3.30.50.103.7E-154479IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.65E-134592No hitNo description
PROSITE patternPS0034404671IPR000679Zinc finger, GATA-type
PfamPF003202.1E-164680IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MFDQMEKGSE KVELKSNNGS TITAAAVGSD VSYSSGSEGQ AIKKTCSDCG TSKTPLWRGG  60
PAGPKSLCNA CGIRSRKRRR ALLGLSKPEE KRSKKSASSS SNNGSISSES GGDGEKKLTS  120
HLKLTGLTWQ RSTADKYRRK LGEEEQAAVL LMAMAYSSVL A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291147.14e-46GATA transcription factor 15-like
SwissprotQ9FJ102e-34GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2R6PWZ73e-41A0A2R6PWZ7_ACTCH; GATA transcription factor
STRINGEOY066432e-41(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-31GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]