PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0061s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 343aa    MW: 38129.9 Da    PI: 6.6248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0061s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11131177455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ + +  L   +P +     kK +Ka++L+ A++Y+k+Lq
  Kalax.0061s0012.1.p 131 DHIIAERKRREKLSQHIISLSAAVPGL-----KKKDKASVLTGAIKYLKQLQ 177
                          699************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.878127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-14132192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-10132181No hitNo description
SMARTSM003537.5E-11133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEDQSFINQW MTNSQEDLSA VMLPMAAATF SDSDLQHSML YDYQQPPTKL LETTSWGSSS  60
VIEPAPDLQT RNYHPATDVS AAAAASFLYP ANPPQFPIGT QITGHHHQGE KGKVSITSDA  120
ATTRISSGAQ DHIIAERKRR EKLSQHIISL SAAVPGLKKK DKASVLTGAI KYLKQLQERV  180
KILEEQTKLN KTAQSVVVLG KAGLVVDDDS HKPLSGEMFM EGIPTEEQLP EIEARVCERN  240
VLLRIHCDRK KCVLEKTLSE MVKLRLTLVS SSVITFGSSA LDITITAQME EECCQTAKEL  300
LVKALRIALT RSMCEDMEAQ IHQILHLYCH YHMHIFFLLT FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2I4GKM45e-69A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein